Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H05
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 32 0.64
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 32 0.64
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 30 2.0
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 30 2.6
04_03_0799 - 19805190-19805749,19806316-19806403 30 2.6
08_02_1319 + 26117353-26117784 29 4.5
07_03_0579 + 19649978-19650442 28 7.9
07_03_0568 - 19593265-19593729 28 7.9
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 28 7.9
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 7.9
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 408 QPYPVCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQY 521
+P+ C C P RDC Y++ R TQ+ +C T++
Sbjct: 53 EPFVACNECAFPVCRDC--YEYERREGTQNCPQCKTRF 88
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 408 QPYPVCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQY 521
+P+ C C P RDC Y++ R TQ+ +C T++
Sbjct: 53 EPFVACNECAFPVCRDC--YEYERREGTQNCPQCKTRF 88
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 406 PNPTPFVKHVPY-PVKEIVKGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRL 582
P+ P K +P+ P+ + K S +P RK+ ALP+T R ++ ++L R
Sbjct: 151 PSSDPTQKKLPFLPISQ--KRCSGTDDAMPHRKDPALPNTLNDINRRSQE--IGKSLARK 206
Query: 583 KRKFMFQSKCTCPLLTQLEKK 645
K Q T P +T ++K
Sbjct: 207 KLATREQKNPTSPDITNNDQK 227
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 589 FFSNGVRFWHIYLDGDGSVDWD 524
F SNG + H+++DG S+ WD
Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 363 PVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDC 458
PV K +P+PV P P P C CP PS C
Sbjct: 94 PVCKLVPFPVPYPAPPPPPAC--CP-PSTHQC 122
>08_02_1319 + 26117353-26117784
Length = 143
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 460 KGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTL 573
+GTS L ++ + P TCP++ RP +RT+
Sbjct: 87 RGTSKPDKYLKAKSDSVRPRTCPAKSGRPPGASSSRTV 124
>07_03_0579 + 19649978-19650442
Length = 154
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 475 RTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 597
R A + +G P+ P+ PR ++LPRLK + +
Sbjct: 99 RVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>07_03_0568 - 19593265-19593729
Length = 154
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 475 RTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 597
R A + +G P+ P+ PR ++LPRLK + +
Sbjct: 99 RVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 414 YPVCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQYMSQSTDPS 545
+ C C P R C Y++ ++ TQ+ +C T+Y P+
Sbjct: 35 FAACDVCGFPVCRPC--YEYERKDGTQACPQCKTKYKRHKGSPA 76
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 323 SSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSN 430
+S S P+RK PGRK P P S + P N
Sbjct: 7 ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAEN 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,718
Number of Sequences: 37544
Number of extensions: 368629
Number of successful extensions: 1260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -