Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H05
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  31   1.5  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          31   1.5  
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  29   4.6  
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)                 29   6.1  
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   6.1  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     28   8.0  

>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
 Frame = +1

Query: 418 PFVKHVPYPVKEIVKGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 597
           P ++ V  P  +   GTSSRT         A  +   + Q+  + G  A T    K+K  
Sbjct: 151 PMIRRVSQPATKPTTGTSSRTDRSRPAPSPARVNQATATQSAKKVGSTAST---EKQKKE 207

Query: 598 FQSKCTCPLL-TQLEKKVPYPVKGSRTCACSLPRIQRGTSTXKGPXGQT 741
             S  T  L      +KV  PV  ++T      R    T+T +G   +T
Sbjct: 208 LSSSSTSSLRGASARRKVSAPVVSNQTLTSVQARRLISTATTQGKPART 256


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/92 (28%), Positives = 32/92 (34%)
 Frame = +1

Query: 400  TFPNPTPFVKHVPYPVKEIVKGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPR 579
            T    T   K++P P       T++ T T P   E   P T     T P       T P 
Sbjct: 1754 TTSTSTSTTKYIPPP--HSPPTTTTTTTTTP---ETTAPRTTTPETTTPETTTPRTTTPE 1808

Query: 580  LKRKFMFQSKCTCPLLTQLEKKVPYPVKGSRT 675
              +      K T P  T   KK P PV  + T
Sbjct: 1809 TTKPRTTTPKTTTPKKTTAAKKAPLPVTHATT 1840


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 326 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 448
           S  +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 411



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 335 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 448
           +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 1   MPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 36


>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 387 PVKVHVP-QPYPVCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYMC 563
           P++ ++P  P+P+CQT PL    + +    T   PT+S      Q  S ST PS   Y  
Sbjct: 108 PIRDNLPLAPHPMCQTLPLQD--NTESKLKTESEPTRS-----PQSDSGSTPPSSPPYHG 160

Query: 564 QN 569
           QN
Sbjct: 161 QN 162


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 335 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 457
           LP  K  P+P   E P+     R+PT+ R ++M LT  + L
Sbjct: 652 LPESKPAPIPVIPEAPVFDPKPRTPTVSRKTSMKLTAEEHL 692


>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 221

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 420 RGRVGERALSRGRGFSFLPGRGCAFRRGR 334
           +GR+G R   RGRG +  PGRG    RGR
Sbjct: 89  QGRLGARG--RGRGMARGPGRGMVGARGR 115


>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 400 TFPNPTPFVKHVPYPVKEIVKGTSSRTATLPSRKE--GALPS 519
           T P+P+     VPYP ++I  G   R  TLP R +  G LPS
Sbjct: 150 TLPSPSDSKWSVPYPPRQISNG---RPLTLPVRYQMVGPLPS 188


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 406 PNPTPFVKHVPYPVKEIVKGTSSRTATLPSRKE--GALPS 519
           P+P+   + VPYP ++I   ++ R+ TLP R +  G LPS
Sbjct: 275 PSPSDIKRSVPYPPRQI---SNVRSLTLPVRYQMFGPLPS 311


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 374 ENPLPRESARSPTLPRLSNMSLTQLK 451
           ++P+P ESARS   PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195


>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 436 PYPVKEIVKGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRL 582
           P P +E  K TS+    +P+  +G + +T PS+Q+    G C   L  L
Sbjct: 318 PLPDEEGGKVTSNEEEVVPAVSQGVVEATSPSQQSLHDFGECPAWLTDL 366


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 357 PY-PVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           PY P+  ++PYP     P P+P     P P
Sbjct: 121 PYSPIPPQVPYPGAAGPPMPHPTASVYPPP 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,233,465
Number of Sequences: 59808
Number of extensions: 400930
Number of successful extensions: 1376
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)