Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H05
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    33   0.25 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.44 
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.1  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   7.1  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   7.1  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 326 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRVP 469
           S S PRR+    P ++    PR + RSP+ PR   +S + ++R SR P
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR-SRSP 134



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 332 SLPRRKAHPL-------PGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRVPV 472
           S P+RK  P+       P R+ +  PR+ +RSP      + S  + +R+SR PV
Sbjct: 75  SPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPV 128


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 2/140 (1%)
 Frame = +1

Query: 403 FPNPTPFVKHVPYPVKEIVKGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRL 582
           FPNP PF K +P P  +       +    P  K    P   P  +  P      + +P+ 
Sbjct: 167 FPNPMPFPKPMPKPKPKPKPMPKHKPKPFP--KPMLFPKPMPIPKPMPFPKPMPKPMPKH 224

Query: 583 KRKFMFQSKCTCPLLTQLEKKVPY--PVKGSRTCACSLPRIQRGTSTXKGPXGQTLPRCI 756
           K K  F      P    + K +P+  P+   +     +P+ +        P     P+  
Sbjct: 225 KPK-PFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPK 283

Query: 757 XQTXALPVENPSIPGXKPVP 816
            +    P +NP +P  KP+P
Sbjct: 284 LKPKTKPKKNP-VPILKPIP 302



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 2/142 (1%)
 Frame = +1

Query: 403 FPNPTPFVKHVPYPVKEIVKGTSSRTATLPSRKEGA--LPSTCPSRQTRPRQGICARTLP 576
           FP P P  K +P+P   +          +P  K  +   P+  P  +  P+     + +P
Sbjct: 129 FPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMP 188

Query: 577 RLKRKFMFQSKCTCPLLTQLEKKVPYPVKGSRTCACSLPRIQRGTSTXKGPXGQTLPRCI 756
           + K K  F      P    + K +P+P          +P+          P     P+ +
Sbjct: 189 KHKPK-PFPKPMLFPKPMPIPKPMPFPK--------PMPKPMPKHKPKPFPKPMLFPKPM 239

Query: 757 XQTXALPVENPSIPGXKPVPYP 822
                +P   P +P  KP P P
Sbjct: 240 PIPKPMPFPKP-MPKPKPKPKP 260



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           P P  K +P P+  H P+P+P     P P
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFPKPMLFPKP 238


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           P P+    P PV   VPQP PV    P+P
Sbjct: 4   PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           P PV   +P PV V +P P P+    P+P
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDC 458
           +P PV + +P P+ + +P P P+    P+P   +C
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           IP PV    P P  V VP P P+    P+P
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           +P P+   IP PV V  P P PV    P+P
Sbjct: 1   MPPPIPIPIPAPVPVPAPVPQPVPVPMPMP 30



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           IP P    +P PV   VP P P+    P+P
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMP 36


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS 446
           P PV + +P PV V VP P  V    P+P+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPT 178



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYP 419
           +P PV  ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPVCQT--CPLP 443
           +P PV+  +P  V V VP P PV Q   C +P
Sbjct: 158 VPVPVQVPVPIRVPVPVPVPTPVYQPTYCAVP 189


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 443
           +P PVE+  P P  V  P P PV  + P P
Sbjct: 214 VPAPVEQIAPPPAPVQDPAPAPVEPSDPAP 243


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 341 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRVP 469
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR P
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKP 199


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 341 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRVP 469
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR P
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKP 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,006
Number of Sequences: 27780
Number of extensions: 285810
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)