Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_H05
(828 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote... 31 1.2
At5g66850.1 68418.m08428 protein kinase family protein contains ... 30 1.6
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 29 2.8
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 29 2.8
At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotia... 29 3.8
At5g15510.1 68418.m01816 expressed protein 29 5.0
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 29 5.0
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 29 5.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 6.6
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 6.6
At3g01015.1 68416.m00001 expressed protein ; expression supporte... 28 8.7
At1g72250.1 68414.m08353 kinesin motor protein-related 28 8.7
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 8.7
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 8.7
>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
kinase, putative similar to GB:AAC50043 from
[Arabidopsis thaliana] (Plant Mol. Biol. 37 (4), 587-596
(1998))
Length = 1014
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 521 VLGKAPSFRLGRVAVRELVPLTISLTG*GTCLTNGVGLGNVHFHGV---GDFLFYRVGDV 351
V +PSF L R A + PL SLT G CL NG N+HF + D Y +G
Sbjct: 480 VNASSPSFGLYRTA--RVSPL--SLTYYGICLGNGNYTVNLHFAEIIFTDDNTLYSLGKR 535
Query: 350 LFD 342
LFD
Sbjct: 536 LFD 538
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 296 PQNRNCR*ESSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLS 427
PQ R+ R + P R + PL + PR+S SP PRLS
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLS 296
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +3
Query: 357 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGYQ-FTYRNPTQSKRRCLTQYMSQS 533
P+P+ + P P P P + P P + Q + F +Q + L SQ
Sbjct: 380 PFPMSQ--PPPTSNPFPLSQPPSNSKPFPMSQSSQNSKPFPVSQSSQKSKPLLVSQSSQR 437
Query: 534 TDPSPSRYMCQNLTPF 581
+ P P QN PF
Sbjct: 438 SKPLPVSQSLQNSNPF 453
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 372 KKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGYQFTYRNPTQ 494
+++P+ VP+P P QT PLP + +F RN T+
Sbjct: 1373 QRVPFSESPVVPKPSPSTQTEPLPQPKGFNRSRFVNRNCTR 1413
>At3g54200.1 68416.m05991 expressed protein hin1 protein, Nicotiana
tabacum, PIR:T03265
Length = 235
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 527 GHVLGKAPSFRLGRVAVRELVPLTISLT 444
G V+G+AP R+A R+ VPL I+LT
Sbjct: 138 GQVIGEAP-LPANRIAARKTVPLNITLT 164
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 347 KAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 457
KA P+P +PR S++ PT PR + Q K++
Sbjct: 438 KAQPMPYFDRPFIPRRSSKHPTAPRDPKFHIPQHKKI 474
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 329 RSLPRRKAHPLPGRKENPLPRESARSPTLP 418
+ +P K P+P K P+P S SP++P
Sbjct: 37 KPVPSPKPKPVPSPKPKPVPSPSVPSPSVP 66
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 409 NPTPFVKHVPYPVKEIVKGTSSRTATLPSRKEGALPSTCPSRQTRPR 549
NP+P K VP P + V + PS ++PS P T PR
Sbjct: 31 NPSPKHKPVPSPKPKPVPSPKPKPVPSPSVPSPSVPSPNPRPVTPPR 77
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 408 QPYPVCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQY 521
+P+ C C P+ R C Y++ R Q+ +C T+Y
Sbjct: 53 EPFIACNECAFPTCRPC--YEYERREGNQACPQCGTRY 88
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 326 SRSLPRRKAHPL-PGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRVP 469
SRS RR P GR+++P P RSP+ P S + R R P
Sbjct: 285 SRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSP 333
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 416 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 330
VG+G+V GVGD VGDV DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222
>At3g01015.1 68416.m00001 expressed protein ; expression supported
by MPSS
Length = 488
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 347 KAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 457
KA P+P +P+ S + PT+PR ++ Q K++
Sbjct: 428 KAQPMPYFDRPFIPKRSNKHPTVPRDPKFNIPQHKKI 464
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +1
Query: 526 PSRQTRPRQGICARTLPRLKRKFMFQSKCTCPLLTQLEKKVPYPVKGSRTCACSLPRIQR 705
P R R ICA+ +P R+ F P+ + L P G+ C+ P++ R
Sbjct: 1061 PKRIGAGRSSICAKRIPPAPRRKSFAPMPFIPITSTLTS--PDEKSGANQVLCTSPKLHR 1118
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 329 RSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSR 463
R P R+ PLP R+ +P PR P + S + ++R R
Sbjct: 292 RGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGR 336
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 329 RSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSR 463
R P R+ PLP R+ +P PR P + S + ++R R
Sbjct: 299 RGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGR 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,006
Number of Sequences: 28952
Number of extensions: 271390
Number of successful extensions: 852
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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