Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H04
         (851 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    27   0.14 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.76 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   1.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   4.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   7.1  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 650  HFQFIXLVENTDETYCIDNEALYDICFRTLK 742
            H+Q I ++  +  TY ID  A+ D C+ T++
Sbjct: 1354 HWQKIIIIVMSSVTYGIDTVAVCDACYSTIE 1384


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 363 VFGQSGAGNNW-AKGHYTEGAELVDSVLDVVRKEAESCDCLQGIPT 497
           +  + G  N + A+  Y  G+E   S++ +   +  +C C  G PT
Sbjct: 839 ILAEGGCPNLYDARKPYVNGSEYHPSIVSLGEYKCVTCKCENGKPT 884


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 35  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 67



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 104 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 134


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 132  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 254
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 432 DSVLDVVRKEAESCDCLQGIPTDTLARRRHRFRY 533
           D V    RK AE C  LQG   +   +R+   R+
Sbjct: 233 DVVASNSRKTAEMCYKLQGFYPEEAPQRKELLRF 266


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 677 FQLNX*TESVALYGSTTVSDTLGDGTTEYVFIILSG 570
           FQL+  T   +++G TTV+ T        + ++ SG
Sbjct: 39  FQLSETTAPRSIHGGTTVTITATQTGESEMMVVTSG 74


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 517 RRRASVSVGIPWRQSHDSASFRTTSKTESTSSA 419
           +R A   +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLAPTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 505 SVSVGIPWRQSHDSASFRTTSKTESTSSAPS 413
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,189
Number of Sequences: 336
Number of extensions: 3666
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)