Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H02
         (829 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07979-1|CAA30790.1|  798|Homo sapiens protein ( Human mRNA for ...    32   2.2  
BX537407-1|CAD97649.1|  823|Homo sapiens hypothetical protein pr...    31   6.7  
BC020057-1|AAH20057.1|  798|Homo sapiens integrin, beta 1 (fibro...    31   6.7  
AL365203-2|CAI14426.1|  798|Homo sapiens integrin, beta 1 (fibro...    31   6.7  
BC032382-1|AAH32382.1|  237|Homo sapiens LOC440456 protein protein.    30   8.9  

>X07979-1|CAA30790.1|  798|Homo sapiens protein ( Human mRNA for
           integrin beta 1 subunit. ).
          Length = 798

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 497 PYLSSTPSKRKFPLPSRNTSNTQYTYLNLTPLKRK 601
           PY+S+TP+K + P  S     T ++Y N+  L  K
Sbjct: 194 PYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNK 228


>BX537407-1|CAD97649.1|  823|Homo sapiens hypothetical protein
           protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 497 PYLSSTPSKRKFPLPSRNTSNTQYTYLNLTPLKRK 601
           PY+S+TP+K + P  S     + ++Y N+  L  K
Sbjct: 219 PYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNK 253


>BC020057-1|AAH20057.1|  798|Homo sapiens integrin, beta 1
           (fibronectin receptor, beta polypeptide, antigen CD29
           includes protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 497 PYLSSTPSKRKFPLPSRNTSNTQYTYLNLTPLKRK 601
           PY+S+TP+K + P  S     + ++Y N+  L  K
Sbjct: 194 PYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNK 228


>AL365203-2|CAI14426.1|  798|Homo sapiens integrin, beta 1
           (fibronectin receptor, beta polypeptide, antigen CD29
           includes protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 497 PYLSSTPSKRKFPLPSRNTSNTQYTYLNLTPLKRK 601
           PY+S+TP+K + P  S     + ++Y N+  L  K
Sbjct: 194 PYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNK 228


>BC032382-1|AAH32382.1|  237|Homo sapiens LOC440456 protein protein.
          Length = 237

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 419 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSSTPSKRKFPL-PSRNTSNT 562
           RC  +++ R TSP P R+  P R   P L + P++    L P++ T  T
Sbjct: 118 RCRCQLRFRETSPAPPRKPRPGRWSGPNLPAPPTRPLGSLRPAQQTRGT 166


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,709,006
Number of Sequences: 237096
Number of extensions: 1620468
Number of successful extensions: 4012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4012
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)