Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H01
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.5  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   5.9  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    26   5.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.8  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 519 SGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 373
           SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 154 SGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
 Frame = -3

Query: 345 LQDSPFLSVNT-----LLLSVGLTMMSSRXXXXXXXXXXXXPKMFRSKAGSKVVSWARPT 181
           LQ  P LS NT     L+  + L   +SR                 +K  +++VS +   
Sbjct: 207 LQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLD 266

Query: 180 VTSTASKSERIALLLLKHSEKENIQNFTSLYYENYALISTLSLF 49
            +ST SKS    + L  H    ++QN +     +   +   SLF
Sbjct: 267 SSSTLSKSVNSKINLKSHQSSSSVQNSSRKLTSSQLTLRQSSLF 310


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 620 PGXVALLDALNESYAGVGVLIHPQVVMTGAHI 715
           PG  +L++ L+     +GV  HP  ++  AH+
Sbjct: 94  PGAESLINNLSNHGIDIGVCTHPYAIIKTAHL 125


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 534  STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTP 382
            ST   S  G  T + +     +++ +  +SS  L SSTP   + AL TSTP
Sbjct: 933  STPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTP 983


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,379
Number of Sequences: 5004
Number of extensions: 51309
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)