Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H01
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368     32   0.50 
11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988...    32   0.67 
02_04_0054 + 19279579-19280772                                         32   0.67 
01_02_0007 + 10132380-10133201                                         25   2.0  
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136           29   4.7  
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    29   6.2  

>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
          Length = 487

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -3

Query: 534 STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSL 376
           S+SRG G G G G   G     +T S+  SSP+   STP P + A   + P L
Sbjct: 154 SSSRGGGGGRGVGGGSGR----ATPSFPGSSPHHYPSTPTPASAAAAANYPPL 202


>11_04_0017 +
           12297539-12297697,12298191-12298229,12298457-12298825,
           12298921-12299058
          Length = 234

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 277 QVPRAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 155
           +VP A ++  GGR  D +  GR+ G   G   C   RQ K+
Sbjct: 2   EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42


>02_04_0054 + 19279579-19280772
          Length = 397

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 412 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPRAGL--RRRGGR 239
           RH G+  +   +   T ++ +A+    +L+ KHA  L  + ++   V RA L  RRR  R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375

Query: 238 SED 230
             D
Sbjct: 376 ESD 378


>01_02_0007 + 10132380-10133201
          Length = 273

 Score = 25.4 bits (53), Expect(2) = 2.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 482 NPITEPVPKPQPDP 523
           NP  +P+P+PQP P
Sbjct: 67  NPQPQPLPQPQPQP 80



 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 497 PVPKPQPDPLEVEG 538
           P P+PQP PL + G
Sbjct: 88  PQPQPQPQPLPLPG 101


>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
          Length = 257

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 428 DVRFGEEDCQESVEICCTNPITEPVPKPQPDP 523
           D+RF ++D  E++E     P+++P  +P+P P
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCP 197


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 476 CTNPITEPVPKPQPDPLEVEGMRLQ 550
           C  P   P+P+P+P P  VE +R++
Sbjct: 37  CPPPPPPPLPRPRPPPPAVEALRIR 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,493
Number of Sequences: 37544
Number of extensions: 400581
Number of successful extensions: 1614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)