Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_H01
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    32   0.56 
At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa...    31   0.74 
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot...    30   1.7  
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot...    30   1.7  
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot...    30   2.2  
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa...    29   3.9  
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun...    29   5.2  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   5.2  
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ...    28   6.9  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    28   9.1  
At3g09670.1 68416.m01146 PWWP domain-containing protein                28   9.1  

>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 507 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 367
           +GT + +G+ QQ+  ++ Q   PNL S++ + V + +  +    FLL
Sbjct: 35  YGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLL 81


>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 338 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDCQESVEICC 478
           +C C+P     KN    D ++    G+ ++ V FG+++ +E  EICC
Sbjct: 20  TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62


>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 555

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 507 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 367
           +GT S +G+ QQ+  ++ Q   PN+ S++ + V + +  +    FL+
Sbjct: 37  YGTASPLGVPQQVILINGQFPGPNINSTSNNNVIVNVFNNLDEPFLI 83


>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 549

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 507 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 367
           +GT S +G+ Q++  ++ Q   PNL S++ + V + +       FLL
Sbjct: 34  YGTASPLGVPQKVILINGQFPGPNLNSTSNNNVVINVFNHLDEPFLL 80


>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 554

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 507 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 367
           +GT S +G+ QQ+  ++ Q   PN+ S++ + V + +  +    FLL
Sbjct: 36  YGTVSPLGVPQQVILINGQFPGPNVNSTSNNNVIINVFNNLDEPFLL 82


>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 166

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 473 CCTNPITEPVPKPQPD 520
           CC  P+ + VPKP PD
Sbjct: 60  CCLRPVLQHVPKPDPD 75


>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
           subunit-related contains pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 527

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 534 STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHP 412
           S S G G G+G+GS  G++  +  ++ +    + +S T  P
Sbjct: 198 SISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPP 238


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 537 PSTSRGSGCGFGTGSVMGLVQQIS-TLSWQSSS-PNLTSSTPHPVTLALLTS 388
           P +S G   GF +G+   L    + + SW  SS P   SSTP P   +  TS
Sbjct: 568 PVSSSGFLSGFSSGTQSSLASMAAPSFSWPGSSQPQQLSSTPAPFPASSPTS 619


>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
           protein 
          Length = 550

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 272 NLEDIIVKPTESNSVFTDKNGESCKCV 352
           N E  I+ P  S      +NG+ C CV
Sbjct: 184 NFEGCILNPVSSKEELASRNGDGCDCV 210


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 477 QQISTLSWQSSSPNLTSSTPHPVTLALLTST 385
           + +++LSWQ+S P + +   +   +ALL ST
Sbjct: 310 EDVTSLSWQTSKPVIVNEKNYTSEMALLGST 340


>At3g09670.1 68416.m01146 PWWP domain-containing protein
          Length = 726

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 534 STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPS 379
           STS+ +    G+G  +    +   LS +  SP+ T S+PH  ++   TS  S
Sbjct: 576 STSKKAAKSNGSGKSLQEKPKAEALSAREISPSTTLSSPHAASVTKTTSGKS 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,508
Number of Sequences: 28952
Number of extensions: 290359
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)