Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G22
(865 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 46 4e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 3e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.015
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.035
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.035
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.035
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.046
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.046
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.046
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 35 0.061
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 35 0.061
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.061
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 34 0.11
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 34 0.11
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.11
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.11
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 34 0.14
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 33 0.19
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 33 0.19
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.19
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.43
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 32 0.57
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 32 0.57
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.57
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 31 0.99
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 31 0.99
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.99
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 31 0.99
At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo s... 31 1.3
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 31 1.3
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 31 1.3
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.7
At5g52810.1 68418.m06554 ornithine cyclodeaminase/mu-crystallin ... 30 1.7
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 30 1.7
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 1.7
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 2.3
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 2.3
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 3.0
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 3.0
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 4.0
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 4.0
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 4.0
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 5.3
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 5.3
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 5.3
At1g76590.1 68414.m08912 zinc-binding family protein similar to ... 29 5.3
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 29 5.3
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 28 7.0
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF... 28 7.0
At5g42370.1 68418.m05159 expressed protein 28 9.2
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 28 9.2
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 28 9.2
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 28 9.2
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 28 9.2
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Frame = +2
Query: 182 LPSASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKVTNLRL--PR 352
L + ++AA G + + P F ++ NLP+DV+ + +LF++ KV R+ R
Sbjct: 220 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 279
Query: 353 EGDRLKGHGYVDFEDRENLIEALNMPD-LTIGGRRVRIEVS 472
E R +G G+V D + L EA++ D + GR +R+ V+
Sbjct: 280 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADPKVTNLRL--PREGDRLKGHGYVDFEDRENLIEALNMPDL 436
+I NL +D E I +LF+D + ++RL +E KG+ +VDF+D ++ AL +
Sbjct: 265 YIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQ 324
Query: 437 TIGGRRVRI 463
I GR V+I
Sbjct: 325 VICGRPVKI 333
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 266 ISNLPYDVEESAIAELFAD-PKVTNLRL--PREGDRLKGHGYVDFEDRENLIEA-LNMPD 433
+ N+PYD E + E+ + V + RL RE + KG+G+ +++D E + A N+
Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQS 72
Query: 434 LTIGGRRVRIE 466
I GR++R++
Sbjct: 73 YEINGRQLRVD 83
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +2
Query: 266 ISNLPYDVEESAIAELFADP---KVTNLRLPREGDRLKGHGYVDF---EDRENLIEALNM 427
+ NLPYDV+ A+A LF +++ + R+ D+ +G G+V E+ E +E N
Sbjct: 117 VGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN- 175
Query: 428 PDLTIGGRRVRIEVSTP 478
+ GRR+ + + P
Sbjct: 176 -SFEVNGRRLTVNRAAP 191
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +2
Query: 188 SASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKVTNLRL--PREG 358
+ +RAA G + + + F ++ NLP+DV+ + LF++ KV + R+ RE
Sbjct: 185 TVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRET 244
Query: 359 DRLKGHGYVDFEDRENLIEALNMPD-LTIGGRRVRIEVS 472
R +G G+V + + A+ D + GR +++ V+
Sbjct: 245 GRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELF---ADPKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ LP+ + + F + N+ RE DR +G+G+V F+D E+ A P+
Sbjct: 16 YVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPN 75
Query: 434 LTIGGR 451
TI GR
Sbjct: 76 PTIEGR 81
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFA--DPKV-TNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ NLP D+ E + +LF+ P V +L++P R G+ +V+F+D + +A++ D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDLKVP---PRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 434 -LTIGGRRVRIEVS 472
G R+R+E++
Sbjct: 67 GYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFA--DPKV-TNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ NLP D+ E + +LF+ P V +L++P R G+ +V+F+D + +A++ D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDLKVP---PRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 434 -LTIGGRRVRIEVS 472
G R+R+E++
Sbjct: 67 GYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFA--DPKV-TNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ NLP D+ E + +LF+ P V +L++P R G+ +V+F+D + +A++ D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDLKVP---PRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 434 -LTIGGRRVRIEVS 472
G R+R+E++
Sbjct: 67 GYDFDGHRLRVELA 80
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADP-KVTNLRL--PREGDRLKGHGYVDFEDRENLIEALN-MP 430
++ NL + V++ A+ LF + KV R+ R+ R KG G+V + + +A+N +
Sbjct: 252 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 311
Query: 431 DLTIGGRRVRI 463
+ GR++R+
Sbjct: 312 GADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADP-KVTNLRL--PREGDRLKGHGYVDFEDRENLIEALN-MP 430
++ NL + V++ A+ LF + KV R+ R+ R KG G+V + + +A+N +
Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319
Query: 431 DLTIGGRRVRI 463
+ GR++R+
Sbjct: 320 GADLDGRQIRV 330
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.5 bits (78), Expect = 0.046
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +2
Query: 251 PFIAHISNLPYDVEESAIAELFAD-PKVTNLRL--PREGDRLKGHGYVDFEDRENLIEAL 421
P + NL +++ + + F D P V ++ R R +G G++ FE EN+ AL
Sbjct: 218 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 422 -NMPDLTIGGRRVRIEVST 475
M + + GR +R+ +++
Sbjct: 278 ATMNGVEVEGRALRLNLAS 296
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 35.1 bits (77), Expect = 0.061
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 242 HRPPFIAHISNLPYDVEESAIAELFADP-KVTNLRLPREGD--RLKGHGYVDFEDRENLI 412
+R A ISNL +E I + F D V ++R+ D + +G Y DF D E+L
Sbjct: 647 YRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLA 706
Query: 413 EALNMPDLTIGGRRVRIEVSTP 478
A+ G+++ I S P
Sbjct: 707 AAIAKNRKMFFGKKISIARSNP 728
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 35.1 bits (77), Expect = 0.061
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 242 HRPPFIAHISNLPYDVEESAIAELFADP-KVTNLRLPREGD--RLKGHGYVDFEDRENLI 412
+R A ISNL +E I + F D V ++R+ D + +G Y DF D E+L
Sbjct: 647 YRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLA 706
Query: 413 EALNMPDLTIGGRRVRIEVSTP 478
A+ G+++ I S P
Sbjct: 707 AAIAKNRKMFFGKKISIARSNP 728
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.1 bits (77), Expect = 0.061
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +2
Query: 224 DDESIPHRPPFIAHISNLPYDVEESAIAELFAD--PKVTNLRLPREGD--RLKGHGYVDF 391
+ ++ + P + +L DV + + E F+D P V + ++ + + R KG+G+V F
Sbjct: 192 EKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Query: 392 EDRENLIEAL-NMPDLTIGGRRVRIEVSTP 478
D AL M R++R+ ++TP
Sbjct: 252 GDENERSRALTEMNGAYCSNRQMRVGIATP 281
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFA--DPKV-TNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ NLP D+ E + +LF+ P V +L++P R G+ +V+FED + +A+ D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDLKIP---PRPPGYAFVEFEDARDADDAIYGRD 66
Query: 434 -LTIGGRRVRIEVS 472
G +R+E++
Sbjct: 67 GYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFA--DPKV-TNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ NLP D+ E + +LF+ P V +L++P R G+ +V+FED + +A+ D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDLKIP---PRPPGYAFVEFEDARDADDAIYGRD 66
Query: 434 -LTIGGRRVRIEVS 472
G +R+E++
Sbjct: 67 GYDFDGHHLRVELA 80
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.3 bits (75), Expect = 0.11
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +2
Query: 149 GYASHTRAPVVLPSASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-P 325
G A R+P PS ++ AV + + H+ +L +V E+ + E+F +
Sbjct: 70 GPARRGRSPPPPPSKGASSPSKKAVQES-------LVLHVDSLSRNVNEAHLKEIFGNFG 122
Query: 326 KVTNLRLP--REGDRLKGHGYVDFEDRENLIEA-LNMPDLTIGGRRVRIEVSTP 478
+V ++ + R + +GHGYV+F+ R + +A L M I G+ V+ + P
Sbjct: 123 EVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLP 176
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.3 bits (75), Expect = 0.11
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +2
Query: 149 GYASHTRAPVVLPSASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-P 325
G A R+P PS ++ AV + + H+ +L +V E+ + E+F +
Sbjct: 70 GPARRGRSPPPPPSKGASSPSKKAVQES-------LVLHVDSLSRNVNEAHLKEIFGNFG 122
Query: 326 KVTNLRLP--REGDRLKGHGYVDFEDRENLIEA-LNMPDLTIGGRRVRIEVSTP 478
+V ++ + R + +GHGYV+F+ R + +A L M I G+ V+ + P
Sbjct: 123 EVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLP 176
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.9 bits (74), Expect = 0.14
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFAD-PKVTNLRLPREGDRL-KGHGYVDFEDRENLIEALNM-PD 433
++ NL ++ E + ++F V +++PR+ L KG G+V F E+ ALN+
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQ 347
Query: 434 LTIGGRRVRIEVST 475
L I GR +++ T
Sbjct: 348 LEIAGRAIKVSAVT 361
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFAD-----PKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNM 427
++ NLP D+ S I E F + P LR ++ + + +V+FED ++ A+
Sbjct: 260 YVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC-YAFVEFEDMTSVENAIKA 318
Query: 428 PDLTIGGRRVRIEVSTP 478
+ +GGR+V IE P
Sbjct: 319 SPIYLGGRQVYIEERRP 335
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFAD-----PKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNM 427
++ NLP D+ S I E F + P LR ++ + + +V+FED ++ A+
Sbjct: 319 YVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC-YAFVEFEDMTSVENAIKA 377
Query: 428 PDLTIGGRRVRIEVSTP 478
+ +GGR+V IE P
Sbjct: 378 SPIYLGGRQVYIEERRP 394
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.19
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 152 YASHTRAPVVLPSASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PK 328
Y + PV +PSA A ES ++NL +V E + + F+ +
Sbjct: 205 YVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTI--SVANLDQNVTEEELKKAFSQLGE 262
Query: 329 VTNLRLPREGDRLKGHGYVDFEDRENLIEAL-NMPDLTIGGRRVRIEVS 472
V +++P KG+GYV F+ R + EA+ M IG + VRI S
Sbjct: 263 VIYVKIPAT----KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 307
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELF--ADPKV-TNLRLPREGDRLKGHGYVDFEDRENLIEALNMPD 433
++ NLP D+ + + +LF P V +L++P R G+ +V+FED + +A+ D
Sbjct: 10 YVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIP---PRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 434 -LTIGGRRVRIEVS 472
G R+R+E++
Sbjct: 67 GYDFDGCRLRVEIA 80
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 248 PPFIAHISNLPYDVEESAIAELFADP----KVTNLRLPREGDRLKGHGYVDFEDRENLIE 415
P + +L DV ++ + E F++ K + L R KG+G+V F D +
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 416 AL-NMPDLTIGGRRVRIEVSTP 478
A+ M + R +RI +TP
Sbjct: 257 AMTEMNGVKCSSRAMRIGPATP 278
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 248 PPFIAHISNLPYDVEESAIAELFADP----KVTNLRLPREGDRLKGHGYVDFEDRENLIE 415
P + +L DV ++ + E F++ K + L R KG+G+V F D +
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 416 AL-NMPDLTIGGRRVRIEVSTP 478
A+ M + R +RI +TP
Sbjct: 255 AMTEMNGVKCSSRAMRIGPATP 276
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 248 PPFIAHISNLPYDVEESAIAELFADP----KVTNLRLPREGDRLKGHGYVDFEDRENLIE 415
P + +L DV ++ + E F++ K + L R KG+G+V F D +
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 416 AL-NMPDLTIGGRRVRIEVSTP 478
A+ M + R +RI +TP
Sbjct: 255 AMTEMNGVKCSSRAMRIGPATP 276
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 31.1 bits (67), Expect = 0.99
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADP---KVTNLRLPREGDRLKGHGYVDFEDRENLIEAL-NMP 430
+ISNL Y V I ELFA+ K + R G R KG V + R + + A+
Sbjct: 89 YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG-RSKGTAEVVYSRRGDALAAVKKYN 147
Query: 431 DLTIGGRRVRIEV 469
D+ + G+ ++IE+
Sbjct: 148 DVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 31.1 bits (67), Expect = 0.99
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADP---KVTNLRLPREGDRLKGHGYVDFEDRENLIEAL-NMP 430
+ISNL Y V I ELFA+ K + R G R KG V + R + + A+
Sbjct: 25 YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG-RSKGTAEVVYSRRGDALAAVKKYN 83
Query: 431 DLTIGGRRVRIEV 469
D+ + G+ ++IE+
Sbjct: 84 DVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.1 bits (67), Expect = 0.99
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADP---KVTNLRLPREGDRLKGHGYVDFEDRENLIEAL-NMP 430
+ISNL Y V I ELFA+ K + R G R KG V + R + + A+
Sbjct: 91 YISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG-RSKGTAEVVYSRRGDALAAVKKYN 149
Query: 431 DLTIGGRRVRIEV 469
D+ + G+ ++IE+
Sbjct: 150 DVQLDGKPMKIEI 162
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 31.1 bits (67), Expect = 0.99
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFA---DPKVTNLRLPREGDRLKGHGYVDFEDRENLIEAL-NMP 430
+ISNL Y V I ELF+ D K + R G R KG V F R + + A+
Sbjct: 111 YISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSG-RSKGTAEVVFSRRGDALAAVKRYN 169
Query: 431 DLTIGGRRVRIEV 469
++ + G+ ++IE+
Sbjct: 170 NVQLDGKLMKIEI 182
>At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo
sapiens, EMBL:AF007193
Length = 456
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 281 YDVEESAIAELFADPKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDL 436
Y VE S + F+ P +NL++ + D +KG D D E +EA DL
Sbjct: 301 YSVERSHLIS-FSSPVKSNLKMSNKRDHVKGKLNFDDTDTETCLEAPATADL 351
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 221 VDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKVTNLR--LPREGDRLKGHGYVDF 391
V DE + HR F+ L +D + ++ + F ++ + + + + + KG+G++ F
Sbjct: 120 VADEDLVHRKIFV---HGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILF 176
Query: 392 EDRENLIEALNMPDLTIGGRRVRIEVST 475
+ R AL P IG R ++++
Sbjct: 177 KSRSGARNALKQPQKKIGTRMTACQLAS 204
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 248 PPFIAHISNLPYDV-EESAIAELFADPKVTNLRLPREGDRLKGHGYVDFEDRENLIEALN 424
P + H+S LP DV EE + + V N ++ K V FE+ E EAL
Sbjct: 353 PTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNG--KKQALVQFENEEEAAEALV 410
Query: 425 MPDLT-IGGRRVRIEVS 472
T +GG +RI S
Sbjct: 411 CKHATSLGGSIIRISFS 427
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFAD-PKVTNLRLPREGDRLKGH--GYVDFEDRENLIEALNMPD 433
++ NLP+D + + E+F + + + + ++ +G G+V+FE AL
Sbjct: 296 YVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEASP 355
Query: 434 LTIGGRRVRIE 466
+TIG R+ +E
Sbjct: 356 VTIGDRQAVVE 366
>At5g52810.1 68418.m06554 ornithine cyclodeaminase/mu-crystallin
family protein contains Pfam PF02423: Ornithine
cyclodeaminase/mu-crystallin family
Length = 325
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +3
Query: 108 TIGRTLQKMKRKILDMHRIHGHQLYCLQLLVQHEEAWQLMMSQYHIAPHLLHTSLICLMM 287
T G+TL M +L ++R ++L + + +M+ +APHL+ + L
Sbjct: 97 TTGQTLATMDGTVLTLYRTSSVSGLGSKILARDDSQVLIMVGSGALAPHLIKSHLAAKPS 156
Query: 288 LKKVLL 305
L++V++
Sbjct: 157 LRRVII 162
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 167 RAPVVLPSASRAARGGLAVDDESIPHRP--PFIAHISNLPYDVEESAIAELFADP 325
+ P+ PS+S + GG VDDE+ P P P + S P+ SA FA P
Sbjct: 549 KIPMQPPSSSMHSPGGWLVDDENRPSFPGRPSGLYPSQFPHGTPGSAPVGPFAHP 603
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 263 HISNLPYDVEESAIAEL---FADPKVTNLRLPREGDRLKGHGYVDFEDREN 406
+ NLPY+V+ + +A++ FA+P++ + R+ + +G +V + E+
Sbjct: 88 YFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 138
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 266 ISNLPYDVEESAIAELFA---DPKVTNLRLPREGDRLKGHGYVDFEDRENLIEALN-MPD 433
I L + +++++ + FA D + + RE R +G G+V+F D A++ M
Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98
Query: 434 LTIGGRRVRI 463
+ GR +R+
Sbjct: 99 KELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 266 ISNLPYDVEESAIAELFA---DPKVTNLRLPREGDRLKGHGYVDFEDRENLIEALN-MPD 433
I L + +++++ + FA D + + RE R +G G+V+F D A++ M
Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98
Query: 434 LTIGGRRVRI 463
+ GR +R+
Sbjct: 99 KELNGRHIRV 108
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 248 PPFIAHISNLPYDVEESAIAELF--ADPKVTNLR--LPREGDRLKGHGYVDFEDRENLIE 415
P + + +L DV + + E F + P V + + R R KG+G+V F D I
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 416 AL-NMPDLTIGGRRVRI 463
A+ M + R +RI
Sbjct: 213 AMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 248 PPFIAHISNLPYDVEESAIAELF--ADPKVTNLR--LPREGDRLKGHGYVDFEDRENLIE 415
P + + +L DV + + E F + P V + + R R KG+G+V F D I
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 416 AL-NMPDLTIGGRRVRI 463
A+ M + R +RI
Sbjct: 213 AMTEMNGVPCSTRPMRI 229
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFAD-PKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDLT 439
++S++ V E +A LF++ +V + R+ + + +V+F D + EAL++
Sbjct: 144 YVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTM 203
Query: 440 IGGRRVRI 463
+G VR+
Sbjct: 204 LGFYPVRV 211
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELF--ADPKVTNLRLPREGDRLKGH--GYVDFEDRENLIEALNMP 430
+ +N+ V ++ + F A +VT LRL GD+L +V+F ++ + ALN
Sbjct: 241 YCTNIDKKVSQADVRNFFESACGEVTRLRLL--GDQLHSTRIAFVEFALADSALSALNCS 298
Query: 431 DLTIGGRRVRIEVS-TP 478
+ +G + +R+ S TP
Sbjct: 299 GMVVGSQPIRVSPSKTP 315
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 155 ASHTRAPVVLPSASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKV 331
A T +P + RA AV + ++NL D E + ELF V
Sbjct: 180 APGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAV 239
Query: 332 TNL--RLPREGDRLKGHGYVDFEDRENLIEALN-MPDLTIGGRRVRIEVSTP 478
T + + ++ +G G+V+F RE+ A+N + +R+E +TP
Sbjct: 240 TRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATP 291
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 368 KGHGYVDFEDRENLIEALNMPDLTIGGRRVRIEVST 475
KG+G+V F D ++ A+ P+ I GR+ +++
Sbjct: 58 KGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIAS 93
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 221 VDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKVTNLR--LPREGDRLKGHGYVDF 391
V DE HR F+ L +D + + E F ++ + + + + KG+G++ +
Sbjct: 132 VADEDPVHRKIFV---HGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
Query: 392 EDRENLIEALNMPDLTIGGRRVRIEVST 475
+ R AL P IG R ++++
Sbjct: 189 KSRSGARNALKQPQKKIGSRMTACQLAS 216
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 221 VDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKVTNLR--LPREGDRLKGHGYVDF 391
V DE HR F+ L +D + + E F ++ + + + + KG+G++ +
Sbjct: 132 VADEDPVHRKIFV---HGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
Query: 392 EDRENLIEALNMPDLTIGGRRVRIEVST 475
+ R AL P IG R ++++
Sbjct: 189 KSRSGARNALKQPQKKIGSRMTACQLAS 216
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 221 VDDESIPHRPPFIAHISNLPYDVEESAIAELFAD-PKVTNLR--LPREGDRLKGHGYVDF 391
V DE HR F+ L +D + + E F ++ + + + + KG+G++ +
Sbjct: 132 VADEDPVHRKIFV---HGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
Query: 392 EDRENLIEALNMPDLTIGGRRVRIEVST 475
+ R AL P IG R ++++
Sbjct: 189 KSRSGARNALKQPQKKIGSRMTACQLAS 216
>At1g76590.1 68414.m08912 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 136 FIFCSVRPIVGSCDCGRFCYNACDVGFDPFCLL 38
FI CS+ +C FC + F +CLL
Sbjct: 30 FIPCSIHAASNKSECNMFCLDCSSEAFCSYCLL 62
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFAD-PKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDLT 439
++S++ V E +A LF+ +V + R+ + + + +V+F D + AL++
Sbjct: 131 YVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSLGGTM 190
Query: 440 IGGRRVRI 463
IG VR+
Sbjct: 191 IGYYPVRV 198
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELF--ADPKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDL 436
+ +N+ + E + F A +VT LRL + +V+F E+ + ALN +
Sbjct: 228 YCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNCSGI 287
Query: 437 TIGGRRVRIEVS-TP 478
+G + +R+ S TP
Sbjct: 288 VLGSQPIRVSPSKTP 302
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADPKVTNLRLPREGDRLKGH--GYVDFEDRENLIEALNMPDL 436
++ NLP+D + + E+F + + +G G+V+FE AL +
Sbjct: 296 YVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEASPV 355
Query: 437 TIGGRRVRIE 466
TIG R+ +E
Sbjct: 356 TIGDRQAVVE 365
>At1g21320.1 68414.m02664 VQ motif-containing protein contains
PF05678: VQ motif
Length = 235
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 40 EGKMDQSRHHKHYSRTDHNRNYQQ 111
EG MDQ HH H + NR +++
Sbjct: 144 EGTMDQYYHHHHQEQPHQNRGFER 167
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 536 ERTMGDWRSGPRAVPDA 586
ERT G WR+ PR VP +
Sbjct: 74 ERTFGPWRNSPRFVPSS 90
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 KVTNLRLP--REGDRLKGHGYVDFEDRENLIEALNMPDLTIGGRRVRIEVSTP 478
+VT + +P RE +G Y+D EAL + IGG + +E S P
Sbjct: 508 EVTRVHVPTDRETGASRGFAYIDLTS--GFDEALQLSGSEIGGGNIHVEESRP 558
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 DESIPHRPPFIAHISNLPYDVEESAIAELF---ADPKVTNLRLPREGDRLKGHGYVDFED 397
D + HR F+ LP++ + +F + + + + + + KG G+V F+
Sbjct: 98 DRDVTHRKIFVY---GLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 398 RENLIEALNMPDLTIGGRRVRIEVST 475
R+ EAL P I R ++++
Sbjct: 155 RKGAKEALKEPKKRILNRTATCQLAS 180
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 DESIPHRPPFIAHISNLPYDVEESAIAELF---ADPKVTNLRLPREGDRLKGHGYVDFED 397
D + HR F+ LP++ + +F + + + + + + KG G+V F+
Sbjct: 98 DRDVTHRKIFVY---GLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 398 RENLIEALNMPDLTIGGRRVRIEVST 475
R+ EAL P I R ++++
Sbjct: 155 RKGAKEALKEPKKRILNRTATCQLAS 180
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 263 HISNLPYDVEESAIAELFADPKVT-NLRLPREGD-RLKGHGYVDFEDRENLIEALN 424
++ NL + + + ++F + VT + + R+G+ + KG G+V+FE+ ++ A++
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVD 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,916
Number of Sequences: 28952
Number of extensions: 290454
Number of successful extensions: 1016
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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