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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G21
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    37   0.003
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    36   0.006
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    32   0.12 
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.16 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    31   0.21 
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    31   0.28 
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    30   0.37 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    30   0.37 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    30   0.49 
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    29   0.64 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.64 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    29   1.1  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   1.5  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    28   1.5  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    28   2.0  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    28   2.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   2.0  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    27   2.6  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    27   3.4  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    27   4.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    27   4.5  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    27   4.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   4.5  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   4.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   6.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   6.0  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   6.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   7.9  

>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 254 SRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVES 433
           S +R   + T EEK +    +NR AA   R RKK  +  +++++  +   NE L+++V  
Sbjct: 461 SSRRNSKNETDEEKRKSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQV-- 518

Query: 434 LKALNERLISENTAL 478
             AL E ++S  T L
Sbjct: 519 -SALREEIVSLKTLL 532


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +2

Query: 287 EEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISE 466
           +E   ++K +NR A +  R RK+  +  +E+Q+   KE++   T E + L+    +L  E
Sbjct: 76  QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 135

Query: 467 NTALREAA 490
              L++ +
Sbjct: 136 LRILKDGS 143


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 314  KNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREA 487
            KN  A +  +   + K+ E   +   FK+    L  EVE+LK   E+  ++NT L  A
Sbjct: 1359 KNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAA 1416


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 314 KNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLK 439
           KN     TSR     + DE+E Q++   ++NE+   +++ LK
Sbjct: 130 KNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELK 171


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 23/106 (21%), Positives = 41/106 (38%)
 Frame = +2

Query: 209 EEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIR 388
           EED D + + AS S   KR        +K  +KK     A    +  K  K  + E + +
Sbjct: 147 EEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKK 206

Query: 389 DFKEMNERLTSEVESLKALNERLISENTALREAAAAQSVPGGQGPA 526
           D +  +++  S     +   ++ I         ++ + V  G  PA
Sbjct: 207 DKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEKVKEGNRPA 252


>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 293 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENT 472
           K    K +NR AAQ  R +KK  +  ++ Q+  +   N+ L   ++S   L E +I   T
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKEL---LQSANDLREEIIKLRT 179


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 287 EEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISE 466
           +EK +R   +NR+AA   R +KK  + E+E       E ++RL   +  L+    RL S+
Sbjct: 10  DEKRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQ 69


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 365 DEMESQIRDFKEM---NERLTSEVESLKALNERLISENTALREAA 490
           D  + QIR +KE+   ++  +  ++ L+  NERL+SEN  LR  A
Sbjct: 12  DLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTA 56


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 293 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLIS-EN 469
           K  R+K  + +     RDR  A  D   S      E    +T E     +LNE+L+S + 
Sbjct: 741 KRHRRKQSSSIPVLDLRDRSSAISDLSLSTASSVLEAQSLITPERPKRPSLNEKLLSLDG 800

Query: 470 TALREAAAAQSVPGGQGPAESTP 538
           T++R   A QS    +  AE +P
Sbjct: 801 TSIR--LAGQSF-NYENSAEDSP 820


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 26/107 (24%), Positives = 45/107 (42%)
 Frame = +2

Query: 185 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKM 364
           +PN  L+++  S+  L   +P PS  R    L  +E  Q   L      QT+++    +M
Sbjct: 80  LPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQE--QTMLLVRHRQLQTAQN-YLTEM 136

Query: 365 DEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAAQSV 505
            E   +I++    NERL +         E  ++   A   AA +  +
Sbjct: 137 KEALGRIKNELSTNERLDTSAREALVKQESELTVKIAQFTAAISNGI 183


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
 Frame = +2

Query: 185 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSR----DRK 352
           + +N  +K+E + +   V+     RK RL     E+++Q K+  N++ +   +    DR+
Sbjct: 445 ITSNSQLKDEITSLKQTVSESEAERK-RLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQ 503

Query: 353 KAKMDE----MESQIRDFKEMNERLTSEVESLKALNERLISENTALREA 487
             + +E     E ++ + +++    T + + L+ L E+L  E   L++A
Sbjct: 504 LKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQA 552


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 324 TRFFSFFLCIFSSHVRWSSRRFLD--GDGDATSRIISESSS 208
           TRFF     + S + +W++++F +     D TS + +++SS
Sbjct: 695 TRFFRVIYIVLSKYTQWTTQKFFEEANKQDDTSEVQNDNSS 735


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 430 ELESFEREVD*REHSATRSGGGAERPGW 513
           ELE+FE+E+   E S T++ G +++P +
Sbjct: 341 ELENFEKEIFKAEVSETKNNGNSDKPSF 368


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +2

Query: 293 KMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISEN 469
           K+ +KKLK+        D+K   ++E E +++   E  E+  ++  S   L E+ ++++
Sbjct: 4   KLSKKKLKSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQS 62


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 374 ESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAAQSV 505
           ++ + + K  N+ LTS++ +L+     L  ENT L EA +   V
Sbjct: 456 QNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRV 499


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/80 (20%), Positives = 39/80 (48%)
 Frame = +2

Query: 227 ILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAKMDEMESQIRDFKEMN 406
           +LDV SP  S  R + ++     ++ KK+      +    R +    ++E+Q   F+++ 
Sbjct: 211 LLDVHSPDNSNHRTMLNINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQHHSFQQIC 270

Query: 407 ERLTSEVESLKALNERLISE 466
           + L   +E+  +  ++ +S+
Sbjct: 271 QTLRKRLENDSSTTKQRLSK 290


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 215 DSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDRKKAK 361
           D +  ++  S  PS+K + D    +EK + K  K R A   S + KK+K
Sbjct: 446 DVEETVETISEKPSKKEKKDK---KEKKKEKSKKKRSADDASEEVKKSK 491


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 185 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEKMQRKKLKNR 322
           + N     EE+ D +     P  S    LDH + E++MQ+   KN+
Sbjct: 318 IKNQLFKSEEEKDPVGKQKLPLESSLSPLDHSSAEKEMQKAPAKNK 363


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 359 WLSFCREKSVLPRDFSVSFFAFFLPMSDGPVAVSWTET 246
           WL   R   +LPR     + + FL   DG + + W +T
Sbjct: 502 WLHVIRSLELLPRPLGTDWSSVFLQKFDGTITI-WPKT 538


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/66 (19%), Positives = 33/66 (50%)
 Frame = +2

Query: 311 LKNRVAAQTSRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAA 490
           ++ +   Q  ++  ++  +E++S  +DF E+++ +      L  L +   S+N    EA 
Sbjct: 132 MEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVILKVERELHTLRQNTPSQNEQ-AEAT 190

Query: 491 AAQSVP 508
            ++ +P
Sbjct: 191 PSKEIP 196


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
 Frame = +2

Query: 209 EEDS-DMILDVA-SPSPSRKRRLDHLTWEEKMQRKKLKNRVAAQTSRDR-----KKAKMD 367
           EED  D  LD + SP  S+K ++   + +E  +R+K K +   +  +D+     K+ K+D
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLD 167

Query: 368 EMESQIRDFK 397
           +  +Q R  K
Sbjct: 168 DSHTQKRKRK 177


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 377 SQIRDFKEMNERLTSEVESLKALNERLISENTALRE 484
           S+ + F+++  RL       K + ERL++EN   +E
Sbjct: 411 SEYQGFQKLAARLNCSYADAKRIEERLVNENIIYKE 446


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 284 WEEKMQRKKLKNRVAAQTSRDRKKAKMDEM 373
           WE+ +        +A +TSRD KK K +++
Sbjct: 127 WEDDLASNSSPASIAKKTSRDSKKRKREDL 156


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 338 SRDRKKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAA 496
           +++RK+    +   ++   K+  E L S +ES +  N    + +T+L  +A+A
Sbjct: 72  TKERKEMLKKKCTDELESSKKKIEELVSSIESFQGENGEAKTGSTSLTRSASA 124


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 614 SSRNSIPRNTSTPYMNL----QTPSSXKLMQVLQERLN 715
           SS NSIP  TST Y+++     TPS      VL E LN
Sbjct: 2   SSVNSIPTATSTVYISVLPATATPSGGSGGNVLHEDLN 39


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 350 KKAKMDEMESQIRD-FKEMNERLTSEVES 433
           K +K  E ES ++D   EMN+RL  ++ES
Sbjct: 510 KLSKQVEEESSMKDDLTEMNQRLKEQIES 538


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +2

Query: 287 EEKMQRKKLKNRVAAQTSRDRKKAKMDE----MESQIRDFKEMNERLTSEVESLKALNER 454
           ++K ++KK K    A   +DRK  K +E    + S +    + N+   + +    A  + 
Sbjct: 176 KDKKKKKKSKENDDAP-KKDRKTRKKEEKARKLASMLESENKDNDANAAPLNKTDAFKDG 234

Query: 455 LISENTALREAAAAQSVPGGQGPAE 529
           L S       A+  +  P G  PA+
Sbjct: 235 LPSGRLIFAYASGQKVAPDGSNPAD 259


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 428 PPHL*DAHSFL*NPLSDSPFRPSWLSFCREKSVLPRDFSVSFFAFFLPM-SDGPVAVSWT 252
           P  L  A  FL   LSD  F  S      E  + P+   V + +F  P  SDGP+ V W 
Sbjct: 166 PSRLLQAQCFL--ELSDKRFEESHT----EIQIGPKFTVVLYTSFSQPSKSDGPLDVRWQ 219

Query: 251 ET 246
           ET
Sbjct: 220 ET 221


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 451 LVQSFQ--ALHLTCETLIHFFEIPYLTLHF-VHLGFLS 347
           L+QS     L+  CE +  ++EIP L + F  H  F S
Sbjct: 716 LIQSLSNGRLYSQCEAMTEYYEIPVLLIEFEQHQSFTS 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,538
Number of Sequences: 5004
Number of extensions: 54270
Number of successful extensions: 224
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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