Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G19
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 265 5e-72
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 140 2e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 139 4e-34
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 135 6e-33
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.4
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.8
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 5.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 265 bits (650), Expect = 5e-72
Identities = 117/174 (67%), Positives = 137/174 (78%)
Frame = +1
Query: 73 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 252
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 253 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 432
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 433 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPRPK 594
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P PK
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPK 174
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = +3
Query: 579 SPSPKVSDTVVEPYNATLSVHQLVENXDE 665
+P+PK SDTVVEPYNATLS+HQLVEN DE
Sbjct: 170 APAPKSSDTVVEPYNATLSMHQLVENSDE 198
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 140 bits (340), Expect = 2e-34
Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 2/179 (1%)
Frame = +1
Query: 73 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 246
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 247 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 426
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 427 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPRPKYQT 603
+R+ +++C LQGF ++ EY + +SV P P+ T
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVST 179
Score = 33.9 bits (74), Expect = 0.029
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 582 PSPKVSDTVVEPYNATLSVHQLVENXD 662
P+P+VS +VVEPYN+ L+ H ++ D
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLAD 199
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 139 bits (337), Expect = 4e-34
Identities = 61/172 (35%), Positives = 104/172 (60%), Gaps = 2/172 (1%)
Frame = +1
Query: 76 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 255
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 256 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 429
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 430 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 585
+ +E++ D L+GF ++ + YP +I+ TYSV P
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 585 SPKVSDTVVEPYNATLSVHQLVENXD 662
S VSD VV+PYN+ L++ +L N D
Sbjct: 175 SQSVSDVVVQPYNSLLALKRLTLNAD 200
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 135 bits (327), Expect = 6e-33
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 6/183 (3%)
Frame = +1
Query: 73 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 234
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 235 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 414
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 415 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPRPK 594
SVL+ +R+ +++C LQGF ++ EY + +SV P P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 595 YQT 603
T
Sbjct: 181 VST 183
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 582 PSPKVSDTVVEPYNATLSVHQLVENXD 662
P+P+VS +VVEPYN+ L+ H ++N D
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSD 203
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 376 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 465
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 112 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 213
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 408
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 449 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 544
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 56 KITYTK*GKSFIYRPANVV 112
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 485 PSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SLAQSIRHCRRTIQCDSLSSPA 646
PS+A+ P P SSQ S S P S + S A SI ++ + ++SS A
Sbjct: 14 PSIASSFPTVKPFSSQNSTTSNPELSHIEKE-SNASSIIISQQPLSPSNISSAA 66
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 507 RYGHPPHLKDP*RVPRQNHEHILSSPSPKVSDTVVEPYNATLSV 638
R PP + P + N +LSSPS SDT P + L++
Sbjct: 291 RLNSPPFITIPQSIKNTNSNFLLSSPS-LFSDTRTRPASYALAL 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,394
Number of Sequences: 5004
Number of extensions: 53342
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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