Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G16
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   7.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   7.7  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 384 PRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQFDRP 539
           P  S  +PTLP  +    TQ    SRY     NP+ S+    + YM  + RP
Sbjct: 490 PTRSVEAPTLPSYAPRHPTQANG-SRYM----NPSTSRMTPQSPYMQNYYRP 536


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = -1

Query: 616 HVHFDWNMNFLFXRGKVLAHIP*TGTGLSNWDMYWVRHLLFDWVGLRYVNWYLDNLFN 443
           ++ FDW +   F   K+L  +P   T      +  +    F  V     +W  D++F+
Sbjct: 502 NILFDWTVGGAFNIVKILTKLPLLSTVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFS 559


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 333 LPRRKAHPLPGRKENPLPRESARSPT-LPRLSNMSLTQLKR 452
           +P R   P+PGR  +P P    R PT +P   N+SL   K+
Sbjct: 588 IPPRVPTPVPGRTLSPKP---TRIPTPIPSSLNVSLESSKK 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,366
Number of Sequences: 5004
Number of extensions: 43238
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)