Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G16
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0561 - 26250488-26251451,26251499-26251620 35 0.071
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 31 0.87
04_03_0904 + 20717005-20718087 31 0.87
04_03_0799 - 19805190-19805749,19806316-19806403 30 2.7
03_02_0504 - 8976973-8979414 30 2.7
04_04_1012 - 30104401-30104955,30105066-30106841 29 3.5
04_04_1005 - 30043698-30044252,30044363-30046138 29 3.5
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 8.1
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 28 8.1
>04_04_0561 - 26250488-26251451,26251499-26251620
Length = 361
Score = 35.1 bits (77), Expect = 0.071
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +3
Query: 366 RKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQFDRPVP 545
R+ + + R S R P M Q R + S R L+QYM+ FD P+P
Sbjct: 257 RQHSQVTRRSERLAKQPTRPTMERCQRVLFRRLGILHDGEDASVERVLSQYMAMFDGPLP 316
Query: 546 VQGICART 569
I A T
Sbjct: 317 PHAIAALT 324
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 396 ARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMSQFDRPVPVQGICART 569
A+ P P + +RL + S R L+QYM+ FD P+P I A T
Sbjct: 508 AKQPARPMMERCQRILFRRLG---ILHDEEDASVERVLSQYMAMFDGPLPPHAIAALT 562
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +3
Query: 651 TPXKVPVHVPAPYPYTKRYXYXXGPXGQTYPVHIPNXCLTPSXXRPIPGXKPXPXPXXXR 830
TP P + P P P Y P P + P TP+ P KP P P +
Sbjct: 270 TPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPK 329
Query: 831 XRP 839
P
Sbjct: 330 PTP 332
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 361 PVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDC 456
PV K +P+PV P P P C CP PS C
Sbjct: 94 PVCKLVPFPVPYPAPPPPPAC--CP-PSTHQC 122
>03_02_0504 - 8976973-8979414
Length = 813
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 339 RRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQY 518
R + H P R+ + ++ AR PT+ R + +L L+ + S + + +Y
Sbjct: 706 RTRQHSQPTRRSERIAKQPAR-PTMERCQRVLFKRLGLLNGKEGA------SIEQVIAEY 758
Query: 519 MSQFDRPVPVQGICART 569
++ FD P+P I A T
Sbjct: 759 VAMFDGPLPAHVIAALT 775
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 339 RRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQY 518
R + H P R+ + ++ AR PT+ R + +L L+ + S + + +Y
Sbjct: 669 RTRQHSQPTRRSERIAKQPAR-PTMERCQRVLFKRLGVLNGEEGA------SIEQVIAEY 721
Query: 519 MSQFDRPVPVQGICART 569
++ FD P+P I A T
Sbjct: 722 VAMFDGPLPAHVIAALT 738
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 339 RRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQY 518
R + H P R+ + ++ AR PT+ R + +L L+ + S + + +Y
Sbjct: 669 RTRQHSQPTRRSERIAKQPAR-PTMERCQRVLFKRLGVLNGEEGA------SIEQVIAEY 721
Query: 519 MSQFDRPVPVQGICART 569
++ FD P+P I A T
Sbjct: 722 VAMFDGPLPAHVIAALT 738
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 321 SSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSN 428
+S S P+RK PGRK P P S + P N
Sbjct: 7 ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAEN 42
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 391 KVHVPQPYPVCQTCPLPS*RDCQGTSSRTATL 486
K+ +P P C TC S RDC G T L
Sbjct: 78 KLGLPNGAPQCATCGSRSIRDCDGKKKLTGKL 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,298
Number of Sequences: 37544
Number of extensions: 347414
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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