Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G16
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       32   0.51 
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          31   1.5  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  29   3.6  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  29   4.7  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  29   6.2  
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)                 29   6.2  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  
SB_7488| Best HMM Match : Laminin_EGF (HMM E-Value=8.4)                28   8.2  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     28   8.2  
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +3

Query: 381 LPRESARSPTLPRLSNMSLTQLK-RLSRYQFTYRNPTQSKRRCLTQYMSQFDRPVPVQGI 557
           L  E  ++ T P  S +++T  + +L R    Y NP +++++ + Q + +++  +PVQ  
Sbjct: 749 LNSEEVKTFTFPETSFIAVTAYQNQLVREFANYDNPAKNRQQSIRQRVQRYNEDIPVQRE 808

Query: 558 CA 563
           C+
Sbjct: 809 CS 810


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 324 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 446
           S  +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 411



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 333 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 446
           +PRR    L   +E P PR+S RS +LP L+N+    L
Sbjct: 1   MPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 36


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = +3

Query: 363 GRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 506
           G     LPR   RS +LP LS  S       SR Q T R P  S   C
Sbjct: 675 GTSNKQLPRPHRRSTSLPSLSPDSSRDSDYQSRAQSTVRAPHPSPSAC 722


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -1

Query: 631 WVRSGHVHFDW-NMNFLFXRGKVLAHIP*TGTGLSNWDMYWVR--HLLFDWVGLRY--VN 467
           WV  GH   DW  +         L H      GL +  + WV   HL+ DWVGL +  V+
Sbjct: 784 WVGLGHSVVDWVGLGHSVVDWVGLGHSVVDWVGLGHSVVDWVGLGHLVVDWVGLGHSVVD 843

Query: 466 W 464
           W
Sbjct: 844 W 844


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 455
           LP  K  P+P   E P+     R+PT+ R ++M LT  + L
Sbjct: 652 LPESKPAPIPVIPEAPVFDPKPRTPTVSRKTSMKLTAEEHL 692


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 312 R*ESSRSLPRRKAHP-LPGRKE-NPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNP 485
           R  + +++ +R +HP +P ++  NP   +   S   P+++NMS+  +   S   +     
Sbjct: 484 RMNAQQNMSQRLSHPSIPEQQAYNPYGNQQVMSQAPPQVNNMSMQNMPAYSSSGYPNMRG 543

Query: 486 TQSKRRCLTQYMSQ 527
            Q +R+     MSQ
Sbjct: 544 NQFQRQLSMPVMSQ 557


>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 221

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 418 RGRVGERALSRGRGFSFLPGRGCAFRRGR 332
           +GR+G R   RGRG +  PGRG    RGR
Sbjct: 89  QGRLGARG--RGRGMARGPGRGMVGARGR 115


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 372 ENPLPRESARSPTLPRLSNMSLTQLK 449
           ++P+P ESARS   PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 636  RKKYLTPXKVPVHVPAPYPYTKRYXYXXGPXGQTYPVHIPNXCLT--PSXXRPIPGXKPX 809
            R KY      P+  P  YPY +   Y         P H P   +   P+  RP+   KP 
Sbjct: 1434 RVKYYPDPSRPLKSPNHYPYPRVKYYDNPSRPLKSPNHYPYSRVKYYPNPSRPLKSPKPL 1493

Query: 810  P 812
            P
Sbjct: 1494 P 1494


>SB_7488| Best HMM Match : Laminin_EGF (HMM E-Value=8.4)
          Length = 224

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
 Frame = +3

Query: 354 PLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRN----PTQSKR-RCLTQY 518
           P    K+  L   +  +P LP   +    QL        T+R     PT  K    +T  
Sbjct: 106 PYIWEKKFELGERAPSAPPLPTALHKYKIQLISKRVVALTFRALVFAPTNIKSVSFITTL 165

Query: 519 MSQFDRPVPVQGICARTLPRLKRKFMFQSKCTCPLLTQ*RKKYLTPXKVP 668
             +  R   +    AR  P  +    FQS CTCP  T  R+K   P   P
Sbjct: 166 YDEKHRWSAIHQFLARPSPFERFALFFQSFCTCPDGTPKRRKAQPPHSRP 215


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 355 PY-PVEKKIPYPVKVHVPQPYPVCQTCPLP 441
           PY P+  ++PYP     P P+P     P P
Sbjct: 121 PYSPIPPQVPYPGAAGPPMPHPTASVYPPP 150


>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 409 PYPVCQTCPLPS*RDCQGTSSRTATLPSR 495
           P P C +CPLP    CQ     +   PSR
Sbjct: 482 PPPGCASCPLPGCASCQPPGCASCPGPSR 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,786,916
Number of Sequences: 59808
Number of extensions: 368695
Number of successful extensions: 1273
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)