Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G16
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 32 0.59
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 3.1
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical p... 28 7.2
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical pr... 28 9.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 9.5
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 28 9.5
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 28 9.5
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 324 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 452
S S PRR+ P ++ PR + RSP+ PR +S + ++R
Sbjct: 88 SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
P P+ P PV VPQP PV P+P
Sbjct: 4 PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
P PV +P PV V +P P P+ P+P
Sbjct: 12 PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDC 456
+P PV + +P P+ + +P P P+ P+P +C
Sbjct: 15 VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
IP PV P P V VP P P+ P+P
Sbjct: 9 IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
+P P+ IP PV V P P PV P+P
Sbjct: 1 MPPPIPIPIPAPVPVPAPVPQPVPVPMPMP 30
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
IP P +P PV VP P P+ P+P
Sbjct: 7 IPIPAPVPVPAPVPQPVPVPMPMPMPMPMP 36
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPVCQTCPLPS 444
P PV + +P PV V VP P V P+P+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPT 178
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYP 417
+P PV ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPVCQT--CPLP 441
+P PV+ +P V V VP P PV Q C +P
Sbjct: 158 VPVPVQVPVPIRVPVPVPVPTPVYQPTYCAVP 189
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
P P K +P P+ H P+P+P P P
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFPKPMLFPKP 238
Score = 27.9 bits (59), Expect = 9.5
Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 1/162 (0%)
Frame = +3
Query: 336 PRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSR-YQFTYRNPTQSKRRCLT 512
P+ K P+P K P P+ +P+ + + F P +
Sbjct: 44 PKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPF 103
Query: 513 QYMSQFDRPVPVQGICARTLPRLKRKFMFQSKCTCPLLTQ*RKKYLTPXKVPVHVPAPYP 692
F +P P+ + P + +F P K L P +P P P
Sbjct: 104 PNPMPFPKPKPMPKHKPKPFP---KPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKS 160
Query: 693 YTKRYXYXXGPXGQTYPVHIPNXCLTPSXXRPIPGXKPXPXP 818
K + P +P +P P +P+P KP P P
Sbjct: 161 KPKSEPF---PNPMPFPKPMPKPKPKP---KPMPKHKPKPFP 196
>Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical
protein Y41E3.1a protein.
Length = 682
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 324 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQ--SK 497
S SLP++ + GRK RE+A T P + SL + LS N Q S
Sbjct: 447 SISLPKQLRNTEKGRKMEQNLRENAEKLTSPFDIHASLMDILNLSELGENELNRMQDASS 506
Query: 498 RRCLTQYMSQFDRPVPVQGICAR 566
+R L+ + +P+PV C++
Sbjct: 507 KRSLSVF-----KPIPVDRTCSQ 524
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPVCQTCPLP 441
+P PVE+ P P V P P PV + P P
Sbjct: 214 VPAPVEQIAPPPAPVQDPAPAPVEPSDPAP 243
>Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical
protein E01B7.1 protein.
Length = 410
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 358 YPVEKKIPYPVKVHVPQPYPVCQTCPLPS*RDCQGTSSRTATLP 489
YP+ +I YP ++ +P P QT P P+ +R +T+P
Sbjct: 315 YPMISEIRYP-DLNTMRPEPTAQTPPAPAAPPAAPALNRQSTIP 357
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +3
Query: 663 VPVHVPAPYPYTKRYXYXXGPXGQTYP---VHIPNXCLTPSXXRPIPGXKPXPXP 818
VP P P PY + P +YP V +P P +P P P P
Sbjct: 62 VPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAP 116
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 339 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 503
+R+ P P R+ P PR+ +RSP PR S + ++LSR + R+ + + R
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSR 211
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 339 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 503
+R+ P P R+ P PR+ +RSP PR S + ++LSR + R+ + + R
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSR 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,585
Number of Sequences: 27780
Number of extensions: 262753
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -