Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G16
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 735 TYPVHIPNXCLTPSXXRPIPGXKP 806
           TYP  +P  CL P    P+ G +P
Sbjct: 479 TYPTLLPQWCL-PPREAPLVGVQP 501


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +3

Query: 435 LTQLKRLSRYQFTYRNPTQSKRRCLT-QYMSQFDRPVPVQGICARTLPR 578
           ++ L     Y   Y N    K+      Y+ Q   PVPV   C    PR
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPVPVPIYCGNFPPR 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 560  TYTLNGDGSVE 528
            TYTL+G GSVE
Sbjct: 1227 TYTLDGVGSVE 1237


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 378 PLPRESARSPTLPRLSNMSLTQLKRLS 458
           PLP      PT+P + +M+    +R+S
Sbjct: 431 PLPNMPGSMPTMPTMPSMAGPIRRRIS 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,697
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)