Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G16
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66850.1 68418.m08428 protein kinase family protein contains ...    30   1.7  
At5g15510.1 68418.m01816 expressed protein                             30   1.7  
At5g09850.1 68418.m01139 transcription elongation factor-related...    30   2.2  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   3.9  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   3.9  
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t...    29   5.1  
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    28   6.8  
At3g01015.1 68416.m00001 expressed protein ; expression supporte...    28   8.9  

>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 294 PQNRNCR*ESSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLS 425
           PQ R+ R +     P R + PL     +  PR+S  SP  PRLS
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLS 296


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 345 KAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYMS 524
           KA P+P      +PR S++ PT PR     + Q K++     +  + T S   C++ +  
Sbjct: 438 KAQPMPYFDRPFIPRRSSKHPTAPRDPKFHIPQHKKIRCCSSSSWSETGS---CMSDFQY 494

Query: 525 QF 530
           QF
Sbjct: 495 QF 496


>At5g09850.1 68418.m01139 transcription elongation factor-related
           low similarity to SP|P10712 Transcription elongation
           factor S-II (Transcription elongation factor A) {Mus
           musculus}
          Length = 353

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
 Frame = +3

Query: 336 PRRKAHPLPG--RKENPLPRESAR-SP---TLPRLSNMSLTQLKRL-SRYQFTYRNPTQS 494
           P RK  P+    R+E+P P + +R SP   T+PR              R Q  YR    +
Sbjct: 258 PERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDKEHKEVDFDTARKRLQQNYRQAENA 317

Query: 495 KRRCLTQYMSQFDRPVPVQG 554
           K++   Q M   D P P +G
Sbjct: 318 KKQRTIQVMDIHDIPKPKKG 337


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 327 RSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSK 497
           R  P R+  PLP R+ +P PR     P    +   S + ++R  R + +  +P + +
Sbjct: 292 RGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGR 348


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 327 RSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSK 497
           R  P R+  PLP R+ +P PR     P    +   S + ++R  R + +  +P + +
Sbjct: 299 RGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGR 355


>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein identical to
           pEARLI 1 (Accession No. L43080): an Arabidopsis member
           of a conserved gene family (PGF95-099), Plant Physiol.
           109 (4), 1497 (1995); contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 168

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 327 RSLPRRKAHPLPGRKENPLPRESARSPTLP 416
           + +P  K  P+P  K  P+P  S  SP++P
Sbjct: 37  KPVPSPKPKPVPSPKPKPVPSPSVPSPSVP 66


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 414 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 328
           VG+G+V   GVGD     VGDV  DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222


>At3g01015.1 68416.m00001 expressed protein ; expression supported
           by MPSS
          Length = 488

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 345 KAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 455
           KA P+P      +P+ S + PT+PR    ++ Q K++
Sbjct: 428 KAQPMPYFDRPFIPKRSNKHPTVPRDPKFNIPQHKKI 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,075
Number of Sequences: 28952
Number of extensions: 254797
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)