Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G15
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   168   1e-42
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    29   1.1  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.5  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.5  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    26   7.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  168 bits (408), Expect = 1e-42
 Identities = 79/140 (56%), Positives = 101/140 (72%)
 Frame = +1

Query: 391 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 570
           EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +
Sbjct: 95  EVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITS 154

Query: 571 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQ 750
           DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEILD+  EDL     
Sbjct: 155 DVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLL 214

Query: 751 AGVANVXALSLAXGYXLLXS 810
           +  + + A+SL   Y  + S
Sbjct: 215 SAASIITAISLGANYPTILS 234



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +2

Query: 128 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMVRKAIK 298
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 318 PALEKLLPHIKGNVGFVFTRGDL 386
           P LE+LLP ++GNVGFVFT  DL
Sbjct: 71  PELERLLPVVRGNVGFVFTNADL 93


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 255 SCSWEKTQWCAKPSK-TTWXNNPALEKLLPHIKGNVGFVF 371
           S S E   W +  SK T W  N     LLPH+K NV  V+
Sbjct: 109 SPSGELLLWSSFDSKITVWSLNTQKGYLLPHVKTNVSKVY 148


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 566 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 441
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 573 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 451
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 303 WSLMALRTIVFFPMSTILEPR 241
           W LM +  ++F  +  ILEPR
Sbjct: 169 WGLMGINVVLFVVVQLILEPR 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,325
Number of Sequences: 5004
Number of extensions: 74395
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)