Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G15
(856 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 109 4e-24
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.17
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 29 4.8
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 4.8
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 4.8
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 6.4
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_30106| Best HMM Match : Plasmodium_HRP (HMM E-Value=2.3) 28 8.4
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.4
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 109 bits (261), Expect = 4e-24
Identities = 50/77 (64%), Positives = 63/77 (81%)
Frame = +1
Query: 379 ETSXEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTI 558
E +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTI
Sbjct: 75 EDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTI 134
Query: 559 EIINDVHILKPGDKVGA 609
EIINDVH++K +K+ A
Sbjct: 135 EIINDVHLIKKDEKLKA 151
Score = 81.4 bits (192), Expect = 9e-16
Identities = 38/51 (74%), Positives = 42/51 (82%)
Frame = +2
Query: 155 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMVRKAIKDHL 307
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHL 51
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 312 NNPALEKLLPHIKGNVGFVFTRGDL 386
NNP LEKLLPHIKGN+GFVFT+ DL
Sbjct: 53 NNPDLEKLLPHIKGNIGFVFTKEDL 77
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -2
Query: 573 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 451
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Frame = +1
Query: 319 QPSRNCCHTSRATLASCSPAETSXEVRDKLLENKVQAPARPGAIAPLSVVIPAHN--TGL 492
QPS RA ++ P + + E ++ +PA +P S+ TGL
Sbjct: 2039 QPSPRSELEKRA-ISDYQPLTINASYHRRPSEPRIVSPAGSSLASPTSIATSVITGVTGL 2097
Query: 493 GPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 600
P S Q LS+ T + ++ D+ PG K
Sbjct: 2098 HPVTVSHHQPLSVITSLVSASVSSTTDMQNSTPGKK 2133
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 29.1 bits (62), Expect = 4.8
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = -3
Query: 710 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 537
+S + +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218
Query: 536 VGIERAWK-KEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSXE 384
+ AWK F R + D A+ G F+ SL + + E
Sbjct: 219 NAFDMAWKYANTFEPYRKFYQENESLDLEAIREGEHDV-EFFATSLEKYNSE 269
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 479 WAGMTTDNGAMAPGRAGAWTLFSNSL 402
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.1 bits (62), Expect = 4.8
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Frame = -3
Query: 755 PAWNLARRSSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---G 588
P+ N S L GA P + T T+ PY + AS +PT+SP
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252
Query: 587 FKMCTSLMISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 441
C+++ P +G ERA ++ S G P++ G NG P
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 605 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 489
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 499 EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 666
E S Q+ + P T++S G+ + V +KP + G + T ++ N+S S
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328
Query: 667 VKQVYDSGTIFAPEILDI 720
VK ++ S T+ P L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346
>SB_30106| Best HMM Match : Plasmodium_HRP (HMM E-Value=2.3)
Length = 376
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 274 HNGAQSHQRPPGTTIQPSRNCCHTSRATLASCSPAETSXEVRDKLLENKVQAPARPG--- 444
+NG H+ T++P N H RA A + + + D+ LE P G
Sbjct: 95 YNGQHEHRALATLTVEPGYNGQHEHRALAALTVEPQYNGQHEDRALETLTVEPGYKGQHE 154
Query: 445 --AIAPLSVVIPAHN 483
A+A L+V P +N
Sbjct: 155 HRALAALTVE-PGYN 168
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 169 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 273
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 274 HNGAQSHQRPPGTTIQPSRNCCHTSRATLASCSPAETSXEVRDKLLENKVQAPARPG--- 444
+NG H+ T++P N H RA A + + + D+ LE P G
Sbjct: 274 YNGQHEHRALATLTVEPGYNGQHEHRALAALTVEPQYNGQHEDRALETLTVEPGYKGQHE 333
Query: 445 --AIAPLSVVIPAHN 483
A+A L+V P +N
Sbjct: 334 HRALAALTVE-PGYN 347
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,598,459
Number of Sequences: 59808
Number of extensions: 600570
Number of successful extensions: 1582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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