Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G15
(856 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 164 8e-41
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 162 2e-40
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 162 2e-40
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 36 0.045
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 5.2
At5g13260.1 68418.m01523 expressed protein 28 6.9
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 6.9
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 28 6.9
At3g23660.1 68416.m02975 transport protein, putative similar to ... 28 9.1
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 164 bits (398), Expect = 8e-41
Identities = 78/135 (57%), Positives = 102/135 (75%)
Frame = +1
Query: 391 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 570
EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 100 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 159
Query: 571 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQ 750
V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++ +DL KF
Sbjct: 160 PVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFA 219
Query: 751 AGVANVXALSLAXGY 795
AGV+ + ALSLA Y
Sbjct: 220 AGVSMITALSLAISY 234
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +2
Query: 116 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMVRKAI 295
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM+++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 296 KDH 304
+ H
Sbjct: 67 RIH 69
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 315 NPALEKLLPHIKGNVGFVFTRGDL 386
N A LLP ++GNVG +FT+GDL
Sbjct: 75 NQAFLSLLPLLQGNVGLIFTKGDL 98
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 162 bits (394), Expect = 2e-40
Identities = 79/150 (52%), Positives = 107/150 (71%), Gaps = 1/150 (0%)
Frame = +1
Query: 391 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 570
EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 99 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Query: 571 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQ 750
V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF
Sbjct: 159 PVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFA 218
Query: 751 AGVANVXALSLAXGY-XLLXSPAXIANGSK 837
+G++ V +L+LA Y L +P N K
Sbjct: 219 SGISMVTSLALAVSYPTLAAAPHMFINAYK 248
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 101 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 280
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 281 VRKAIKDH 304
++++++ H
Sbjct: 61 MKRSVRIH 68
Score = 35.1 bits (77), Expect = 0.060
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3
Query: 315 NPALEKLLPHIKGNVGFVFTRGDL 386
N A+ LLP ++GNVG +FT+GDL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDL 97
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 162 bits (394), Expect = 2e-40
Identities = 79/150 (52%), Positives = 107/150 (71%), Gaps = 1/150 (0%)
Frame = +1
Query: 391 EVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIN 570
EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII
Sbjct: 99 EVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Query: 571 DVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQ 750
V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF
Sbjct: 159 PVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFA 218
Query: 751 AGVANVXALSLAXGY-XLLXSPAXIANGSK 837
+G++ V +L+LA Y L +P N K
Sbjct: 219 SGISMVTSLALAVSYPTLAAAPHMFINAYK 248
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +2
Query: 101 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 280
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 281 VRKAIKDH 304
++++++ H
Sbjct: 61 MKRSVRIH 68
Score = 35.1 bits (77), Expect = 0.060
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3
Query: 315 NPALEKLLPHIKGNVGFVFTRGDL 386
N A+ LLP ++GNVG +FT+GDL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDL 97
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 499 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVK 672
E + L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+ +
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCR 208
Query: 673 QVYDSGTIFAPEILDIKPEDL 735
++ ++ ++ EDL
Sbjct: 209 WSPSDFELYREDLSELYREDL 229
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 746 NLARRSSGLMSRI-SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 570
N+ R + S I +G+ PE+Y+ + PYE E + R +++ P +P +
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413
Query: 569 LMISIVPFEILVGIE 525
L+ + EI G E
Sbjct: 414 LVAATERMEINEGDE 428
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 260 ARYWSHVARYGSAASVASPRYRH 192
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 259 AHGKKHNGAQ---SHQRPPGTTIQPSRNCCHTSRATLASCSPAETSXEVRDKLLENKVQ 426
+H K NG S R P + P R HT+R SC ETS E L+ K +
Sbjct: 10 SHAFKLNGVSYFSSFPRKPNHYM-PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 28.3 bits (60), Expect = 6.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -1
Query: 448 WHQDELELGLCSPTVCHGPQXRSPRVN 368
WHQ+ ++G+C T+C + P ++
Sbjct: 225 WHQNIQDIGVCEDTICSDDDFQIPDID 251
>At3g23660.1 68416.m02975 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 765
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Frame = -1
Query: 466 RLTMGQWHQDELELGLCS-P-TVCHGPQXRSPRVNTKPTLPLMCGNSFSRAGLLXQVVFD 293
R+T W + E C P C P R + T P PL C + QV F
Sbjct: 16 RMTWNVWPHSKAEASKCVIPLAACISPIRRHADIPTLPYAPLRCRTCSAALNAYAQVDFT 75
Query: 292 GFAHHCVFSHEHD 254
C F ++ +
Sbjct: 76 AKLWICPFCYQRN 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,207,701
Number of Sequences: 28952
Number of extensions: 416922
Number of successful extensions: 1144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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