Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G13
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.055
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)            33   0.30 
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               33   0.39 
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              33   0.39 
SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)                 31   1.2  
SB_52971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_13087| Best HMM Match : THAP (HMM E-Value=0.63)                     31   1.6  
SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5435| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +1

Query: 256 KKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLA--IKRNNKLISK-- 423
           K  K I D K + ++    +L+   +    +  ++ S TD  DVL   IK  +K+ SK  
Sbjct: 5   KTNKTISDIKREIKEKTQLILETATNANLLVDVIELSDTDRSDVLLCFIKSVHKIFSKLL 64

Query: 424 -DNKLIANKK 450
            +NKL ANKK
Sbjct: 65  KENKLFANKK 74


>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
          Length = 458

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = +1

Query: 157 KLSETNYEYKHLFGELVGST-NQSAHTSLCWECIKKLKNIRDFKGQARKAQDQ-LLQLVK 330
           +L++T Y  + +  +L  +  +Q A   +  E ++ L++  D + + R+A +Q + Q ++
Sbjct: 295 ELNQTRYRMEQVKTDLQDAEQHQQAEADIAQEKVEGLESALDEERKRREACEQEIRQHME 354

Query: 331 DPLFTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHH 468
           D  F+ S+L+ SKT  ++ +  +       K+   + N+ RAL+ +
Sbjct: 355 DLRFSQSELQRSKTSLMNQIQERETEIQRLKNQAELENRVRALTEN 400


>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
 Frame = +1

Query: 52  NNVLFKRIHLETKMALDSFNNLRRSLCGGCLSSDRKLSETNYEYKHLFGELVGSTNQSAH 231
           NN      HL  + A  + NNL+  + GG L+  ++L    YE  + F   +G  N++A 
Sbjct: 135 NNCSDLCFHLNYRSADGTCNNLQHPMWGGSLTPLKRLLRPIYE--NGFNAPIGWINKNAR 192

Query: 232 TS--LCWECIKKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSK-TDNIDVLAIKR 402
            S  L    +    N+ D K            L  D  FT++ L FS+ +D  D  A   
Sbjct: 193 PSARLVSTELVAAANVTDDKKHTHMLMQWGQFLDHDMDFTVTSLSFSRFSDGADCTATCE 252

Query: 403 N 405
           N
Sbjct: 253 N 253


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 735  PXXIXXXLPX*THHXSSLXRXXHSIYFHYPNIXL*XKQEVXFHYPHH 595
            P  I   +P   HH   L      ++ + PN+ +     V  HYPHH
Sbjct: 1016 PPLIIHRMPILIHHHPWLIHRPAIVHHYGPNLMISHSHHVIHHYPHH 1062


>SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 403 NNKLISKDNKLIANKKRALSHHNGPEITSAF 495
           NNK+  K N    N+K ALS+H+ P++   F
Sbjct: 196 NNKVHKKKNSFQENQKAALSYHDRPKVVPKF 226


>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
          Length = 748

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +2

Query: 89  KWHWIPLITYGGHYAEA---V*VQIGNYQKPIMNTN-IYLVNS---SDPLIRVRTLAYVG 247
           +W+++  +TYG H  +A     V    Y  PI+  N  Y VN      PLI+V    YV 
Sbjct: 300 EWYYVNQVTYGAHLVQANEWYYVNQVTYGAPIVQANECYYVNQVTHGAPLIQVNECYYVN 359

Query: 248 NV 253
            V
Sbjct: 360 QV 361


>SB_52971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +1

Query: 340 FTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSS 519
           FT S  K  K  ++D+L + +++++ S   + I  +   L+HH  P  T  F  +  DS 
Sbjct: 197 FTWSISK-DKLPSLDILMVLQDHRIASTTKQQIVTRILTLTHHTPPSATHPF--LTADSY 253

Query: 520 FLEINTF 540
             E + F
Sbjct: 254 AFEFHYF 260


>SB_13087| Best HMM Match : THAP (HMM E-Value=0.63)
          Length = 318

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +1

Query: 340 FTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSS 519
           FT S  K  K  ++D+L + +++++ S   + I  +   L+HH  P  T  F  +  DS 
Sbjct: 86  FTWSISK-DKLPSLDILMVLQDHRIASTTKQQIVTRILTLTHHTPPSATHPF--LTADSY 142

Query: 520 FLEINTF 540
             E + F
Sbjct: 143 AFEFHYF 149


>SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +1

Query: 265 KNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNN-KLISKDNKLIA 441
           +NI D    A   Q+  L+ + + ++    +  +  D  D++ ++ NN +  S  N ++ 
Sbjct: 239 ENIDDGSRIAFLLQEPDLRYLVENIWNSQSILSAHDDLFDLVLVRWNNHEEWSPWNCILL 298

Query: 442 NKKRALSHHNGPEITSAFG 498
            K+ A +HH    +T A+G
Sbjct: 299 KKEEATAHHKLENVTEAYG 317


>SB_5435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/64 (25%), Positives = 35/64 (54%)
 Frame = +1

Query: 253 IKKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKDNK 432
           I++L +  +  G  ++ +++    +++PL T  K   SK    DV++  ++ +   K +K
Sbjct: 28  IQRLLHTSELSGPGKRPRNRTPGTIQEPLKTQIKPDTSKKTLTDVVSEAKSIESAKKTSK 87

Query: 433 LIAN 444
           LIA+
Sbjct: 88  LIAD 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,689,066
Number of Sequences: 59808
Number of extensions: 334295
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)