Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G12
         (1063 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7T189 Cluster: Growth hormone receptor; n=1; Silurus m...    37   0.77 
UniRef50_Q6Z593 Cluster: Putative uncharacterized protein OSJNBa...    36   1.8  
UniRef50_P14859 Cluster: POU domain, class 2, transcription fact...    35   4.1  
UniRef50_Q4KER1 Cluster: Transcriptional regulator, TetR family;...    34   7.2  
UniRef50_Q2H3N5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q7T189 Cluster: Growth hormone receptor; n=1; Silurus
           meridionalis|Rep: Growth hormone receptor - Silurus
           meridionalis (Southern catfish)
          Length = 602

 Score = 37.1 bits (82), Expect = 0.77
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 343 GPLVSADFTFAASRTIVTWWWRWRFDEFARL 251
           GPLVS  FT   SR +VT+W RW    F+ L
Sbjct: 33  GPLVSPHFTGCRSRELVTFWCRWSSGSFSNL 63


>UniRef50_Q6Z593 Cluster: Putative uncharacterized protein
           OSJNBa0005L24.6; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0005L24.6 - Oryza sativa subsp. japonica (Rice)
          Length = 286

 Score = 35.9 bits (79), Expect = 1.8
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +2

Query: 257 GELIKSPSPPPSHDGSASGEGEISGDEXXXXXXXXSFRXPCLNPXXPXVPRXPGD-PXXX 433
           G L+ SPSPP SH  S +                 +F  PC +     + R P + P   
Sbjct: 58  GHLVASPSPPSSHHDSLAAAAHHPCRACTTAPSAPTFHGPCQSSTATSLHRRPPEPPGTP 117

Query: 434 RXXTLPAXXXLPXXGPXXAPSP 499
              T+PA    P      +PSP
Sbjct: 118 LITTVPAYYHHPLLPVGSSPSP 139


>UniRef50_P14859 Cluster: POU domain, class 2, transcription factor
           1; n=49; Coelomata|Rep: POU domain, class 2,
           transcription factor 1 - Homo sapiens (Human)
          Length = 743

 Score = 34.7 bits (76), Expect = 4.1
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
 Frame = +2

Query: 50  GADPRTAAAVAPCPRWLCATSRSTAPCACATC---QPGRHASRATITT-TLSGRADVTSF 217
           G       A+ P P  L AT+ S    + AT     P    + A +T  +++G +D TS 
Sbjct: 444 GTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSN 503

Query: 218 FNTQMVFDLKEESGELIKSPSPPPSHDGSASGEGEISGDE 337
            NT  V      +   + SPS  PS   SAS     S  E
Sbjct: 504 -NTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASE 542


>UniRef50_Q4KER1 Cluster: Transcriptional regulator, TetR family;
           n=2; Pseudomonas|Rep: Transcriptional regulator, TetR
           family - Pseudomonas fluorescens (strain Pf-5 / ATCC
           BAA-477)
          Length = 198

 Score = 33.9 bits (74), Expect = 7.2
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = -2

Query: 174 VARLAWRPGWQVAQAHGAVERLVAQSQRGHGATAAAVLGSAPSLRCERPPTERVRETL 1
           V +L  R   Q+ Q  G    L  Q+QR      A +L SAPS   E+P  ER RE L
Sbjct: 118 VGQLRERYEQQLVQLLGTPTGLGPQAQRAAAHALANLLNSAPSWFSEQPLAEREREAL 175


>UniRef50_Q2H3N5 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 651

 Score = 33.5 bits (73), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 95  WLCATSRSTAPCACATCQPGRHASRATITTT 187
           W C    +T P  CATC P    ++ TITT+
Sbjct: 549 WHCKKKATTTPGHCATCNPNPFFNQCTITTS 579


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,048,448
Number of Sequences: 1657284
Number of extensions: 7149529
Number of successful extensions: 34166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34059
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 102879334404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)