Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G12
         (1063 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    28   0.11 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   6.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 47  DGADPRTAAAVA-PCPRWLCATSRSTAPCACATCQPGRHASRATITTTLSGRADVTSFFN 223
           +GA PR+   ++ P       +S  T+P + +T  PG+ A+ +T +  LS  A  TS  +
Sbjct: 119 NGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPAT-STTSQNLSSPASSTSSTS 177

Query: 224 TQMVFDLKEESGELIKSPSPP 286
           +         + +  +S +PP
Sbjct: 178 STEKAGTNNNNSKSSQSSNPP 198


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 245 KEESGELIKSPSPPPSH--DGSASGEGEIS 328
           K+E  ELI+     PSH  D S S E + S
Sbjct: 237 KDEKKELIRQTHKSPSHSVDNSNSSEKKSS 266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,565
Number of Sequences: 336
Number of extensions: 1467
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30413615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)