Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G12
         (1063 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   1.1  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   3.4  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 195 PDNVVVMVARLAWRPG---WQVAQAHGAVERLVAQSQRGHGATAAAVLGSAPSLRCERPP 25
           P N+   +  L+  PG   W        + +L+ Q+Q GH A A A       ++ ++PP
Sbjct: 328 PANMFSNIFNLSGNPGDYAWGARGLDDIISQLMEQAQ-GHNAPAPAPEDVIAKMKVQKPP 386

Query: 24  TERVRE 7
            E + E
Sbjct: 387 KELIDE 392


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 331 SADFTFAASRTIVTWWWR-WRFDEFAR 254
           SA+ T  A R     WW  W +D+FAR
Sbjct: 344 SAEITRFADRNFYDDWWNCWTWDQFAR 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,757
Number of Sequences: 5004
Number of extensions: 20665
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)