Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G12
         (1063 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141     33   0.51 
01_02_0078 - 10894871-10895841,10897268-10898426                       30   2.7  
02_03_0411 - 18739279-18739902,18741471-18741671                       30   3.6  
11_06_0043 + 19557966-19558721                                         29   8.3  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   8.3  
06_01_0810 + 6111962-6112507                                           29   8.3  

>02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141
          Length = 352

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
 Frame = +2

Query: 47  DGADPRTAAAVAPCPRWLCATSRSTAPCACATCQPGRHASRATITTTLSGRADVTSFFNT 226
           D  D   A A A   +   +TS+     A  + +P R    ++ T   S  +  T+   T
Sbjct: 42  DDEDGSGAIAAARAKKAPSSTSKLFFSSADGSSEPRRFQYESSRTIQASTDSRATATLET 101

Query: 227 QMVFD----------LKEESGELIKSPSPPPSHDGSASGE 316
           +  FD          LK+    L K+PS P S  GS SGE
Sbjct: 102 ETEFDRDARAIRERQLKQAEESLKKNPSAPASSSGSGSGE 141


>01_02_0078 - 10894871-10895841,10897268-10898426
          Length = 709

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 116 SGWSRRASAGMARPRPPFLGQRRLS 42
           S W  R+SA + RP PP  G+RRL+
Sbjct: 443 SRWRSRSSAPLPRPVPPCRGRRRLA 467


>02_03_0411 - 18739279-18739902,18741471-18741671
          Length = 274

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 56  DPRTAAAVAPCPRWLCATSRSTAPCACATCQPGRHASRATITTTLSGRADVTS 214
           DPR+++A +P P    A+S S           G  A+ A  TTT SG   V+S
Sbjct: 85  DPRSSSAYSPSPASRSASSSSRRCSRARGRGGGGGAAAAASTTTSSGYTSVSS 137


>11_06_0043 + 19557966-19558721
          Length = 251

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 98  LCATSRSTAPCACATCQPGRHASRATI---TTTLSGRADVTSFFNTQMVFDLKEESGELI 268
           L ATS S+A  A  TC   + A ++ I   T   +  A++ S FNT  + +L   +G L 
Sbjct: 21  LLATSSSSASAANFTCTTVQAACQSAIGYTTRNATTYAELLSLFNTSTLAELLRANG-LP 79

Query: 269 KSPSPP 286
            +  PP
Sbjct: 80  PTAMPP 85


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 19/64 (29%), Positives = 21/64 (32%)
 Frame = +2

Query: 386 PXXPXVPRXPGDPXXXRXXTLPAXXXLPXXGPXXAPSPTLXXNLVAXPXXXGXTXLXXCL 565
           P  P +P     P       LP    LP   P   P P+L   LV  P   G        
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPP-PPPPPPPSLPNRLVPPPPAPGIGNKFPAP 665

Query: 566 PXPP 577
           P PP
Sbjct: 666 PPPP 669


>06_01_0810 + 6111962-6112507
          Length = 181

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 102 QSQRGHGATAAAVLGSAPSLRCERPPTERVRET 4
           + QR   ATAA VLG+A   + E PP E  ++T
Sbjct: 96  EEQRETTATAATVLGAAGHDKKEVPPAEEEKKT 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,138
Number of Sequences: 37544
Number of extensions: 240992
Number of successful extensions: 1510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3152842920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)