Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G12
         (1063 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    26   0.49 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    26   0.49 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.49 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   6.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.1  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 192 DNVVVMVARLAWRPGWQVAQAHGAVE 115
           DN++ + +++ W  GW V +  G VE
Sbjct: 126 DNMLEVSSKMPWFKGWTVERKEGKVE 151


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 192 DNVVVMVARLAWRPGWQVAQAHGAVE 115
           DN++ + +++ W  GW V +  G VE
Sbjct: 142 DNMLEVSSKMPWFKGWTVERKEGKVE 167


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 192 DNVVVMVARLAWRPGWQVAQAHGAVE 115
           DN++ + +++ W  GW V +  G VE
Sbjct: 199 DNMLEVSSKMPWFKGWTVERKEGKVE 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 144  QVAQAHGAVERLVAQSQRGHGA 79
            Q  + +GAV  LV Q QRG+ +
Sbjct: 1545 QQQKEYGAVSGLVVQLQRGYNS 1566


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 95  WLCATSRSTAPCACATCQPGRHASRATITT 184
           +L  +SRS  PCA   C  G+    +  +T
Sbjct: 71  YLAESSRSIDPCASKYCGIGKECELSPNST 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,595
Number of Sequences: 438
Number of extensions: 2157
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35427294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)