Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G11
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071...    31   0.94 
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    29   3.8  
04_03_0489 + 16503325-16503747,16503916-16503978                       29   5.0  
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993...    29   5.0  
12_02_1275 - 27482784-27483272                                         28   8.8  
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    28   8.8  
06_03_0685 - 23499779-23500204                                         28   8.8  
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    28   8.8  

>04_03_0665 -
           18506221-18506271,18506331-18506401,18507097-18507169,
           18507476-18507805
          Length = 174

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 169 WKWCGLRRDQTGREG 213
           W WCGLRR + GR G
Sbjct: 65  WMWCGLRRSKAGRRG 79


>11_04_0460 -
           17955102-17955146,17955253-17955310,17955442-17955593,
           17955888-17955993,17956101-17956222,17956766-17956834,
           17956969-17957214,17957331-17957373,17957449-17957520,
           17957954-17958066,17958158-17958238,17958343-17958415,
           17959413-17959519,17960410-17960514,17960684-17960974,
           17961621-17961707,17961774-17961842,17961917-17961973,
           17962057-17962155,17962223-17962312,17962395-17962511,
           17964164-17964244,17964353-17964502,17964812-17964956,
           17967359-17967510,17967647-17967784,17967838-17967914,
           17968032-17968134
          Length = 1015

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 143 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 307
           SSS S+Y N +G    +T   +++ SG  +S     S    +S+ D E   L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835


>04_03_0489 + 16503325-16503747,16503916-16503978
          Length = 161

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 246 PAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 353
           PAA+A L RLRTP+ + C    G    P V  H  A
Sbjct: 49  PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84


>03_06_0034 +
           31197846-31198417,31198562-31198987,31199074-31199386,
           31199510-31199560
          Length = 453

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 264 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 172
           ++RL+  ALR  PSP   F++ L    +TPF
Sbjct: 39  SQRLVYAALRSLPSPRALFASLLSQLSATPF 69


>12_02_1275 - 27482784-27483272
          Length = 162

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 166 QWKWCGLRRDQTGREG 213
           +W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159


>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 366 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 253
           P   + S  +GH +HHR        +  A E DR + L
Sbjct: 44  PFCMLTSSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81


>06_03_0685 - 23499779-23500204
          Length = 141

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 186 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 311
           P R  R RR+ P  GR+  LP    ++CR R P   R    P
Sbjct: 42  PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82


>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
            8509204-8509553,8509631-8509729,8509811-8510105,
            8510200-8510405,8510498-8510689,8510766-8511163,
            8511258-8511444,8511473-8511528,8511800-8511872,
            8512012-8512872,8514353-8514778
          Length = 1134

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 356  RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 252
            R RA S+D R T +  RP T    R P P    AC
Sbjct: 1024 RRRAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,356
Number of Sequences: 37544
Number of extensions: 228053
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)