Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G09
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 101 1e-22
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 42 9e-05
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 3.5
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 4.6
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 6.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 6.1
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 6.1
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 26 8.0
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 26 8.0
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 26 8.0
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 101 bits (242), Expect = 1e-22
Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
Frame = +1
Query: 244 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 420
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 421 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 579
M Y IMFGPD CG + VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 580 IVKPDNTYEVLIDNEKVESGDLKADW--DFLPPKKIKDPE 693
IVKPD T+EV I+ + V G L D+ LPP +I DPE
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPE 246
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 734 DPEXKKPEDW-DKPEHIPXPNAPNLKXGXXNGRKMXP 841
DPE KP DW D+PE IP PNA + +M P
Sbjct: 244 DPEDIKPADWVDEPE-IPDPNAVKPDDWDEDAPRMIP 279
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 734 DPEXKKPEDW--DKPEHIPXPNA 796
DP+ KPEDW D+P +IP P A
Sbjct: 280 DPDAVKPEDWLEDEPLYIPDPEA 302
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 734 DPEXKKPEDWDKPE 775
DPE +KPEDWD E
Sbjct: 299 DPEAQKPEDWDDEE 312
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Frame = +3
Query: 687 P*SXKPEDWDDKPTXQTPXTKSLRIGTNLNTFXTQMP-----QT*XWDXXMDGKWXP 842
P + KP+DWD+ P +++ L +P + WD DG W P
Sbjct: 262 PNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIP 318
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 42.3 bits (95), Expect = 9e-05
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 5/190 (2%)
Frame = +1
Query: 148 SWXSNWVYSEHPGKXFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL-SRKFKPFSNEGK 324
+W S W K G + L S D+ GL T + + + L S P + +
Sbjct: 44 TWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILISNLENPTTRQSS 100
Query: 325 --PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVI 498
P+V+ F VK + CG Y+ + + K++ E P I FG CG I
Sbjct: 101 SVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSI 159
Query: 499 FSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLKADWDFLPP 672
SY GK HL + T +YTL+++ + T + D V +GD+ ++ P
Sbjct: 160 ISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTGDVGTNFFHSPT 218
Query: 673 KKIKDPEAXN 702
K I N
Sbjct: 219 KWITHSNVSN 228
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 502 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES-GDLKADWDFLPPKK 678
S + K H KK +D Y+H+Y + P + + + ++ ES + D+LP
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196
Query: 679 IK 684
+K
Sbjct: 197 MK 198
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 373 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 540
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 541 R--CKDDVYTH 567
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 385 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 564
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 565 HLYTLIVKP 591
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 805 QVWGIWVWNVFR 770
Q WG W+WN FR
Sbjct: 416 QGWGSWMWNSFR 427
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = -1
Query: 495 YVYLLGSWTTDVRAEHNLIWS---LSVHVLLLQFAVKDLEVSASTVNVLFMFDSELDDQG 325
Y+ L GS D R++ +++ V++ LL L ++ T + + +FDS+ +
Sbjct: 779 YLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 838
Query: 324 FTLITERFELTGESIEPRIFR 262
+R G++ E RI+R
Sbjct: 839 DLQAQDRAHRIGQTKEVRIYR 859
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = -1
Query: 702 VXGFRVLDFLGRKEVPIGL*VARFNFLIVNEDFIGVVGF 586
+ G+ +L F+ + +PI ++ N ++ +DF + F
Sbjct: 341 IPGYEILGFIPKSSLPIYYTISDTNIIVPKDDFESKLNF 379
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 8.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 4 WTSWPVFCCIXWSCV 48
W W + CCI + CV
Sbjct: 239 WLLWLIICCILFGCV 253
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 8.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 4 WTSWPVFCCIXWSCV 48
W W + CCI + CV
Sbjct: 206 WLLWLIICCILFGCV 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,676
Number of Sequences: 5004
Number of extensions: 71610
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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