Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G09
(870 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 7e-29
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 81 2e-15
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 29 3.7
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 4.9
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 124 bits (300), Expect = 7e-29
Identities = 57/90 (63%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Frame = +1
Query: 124 FEXXFPDXSWXSNWVYSEHPGKXFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF- 300
F F D SW WV S G GKFK TAGKF+ D E DKG++TSEDA+FY +S KF
Sbjct: 758 FLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAKFE 817
Query: 301 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 390
KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 818 KPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 97.1 bits (231), Expect = 2e-20
Identities = 46/72 (63%), Positives = 54/72 (75%)
Frame = +1
Query: 481 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLKADWD 660
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+L+ DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 661 FLPPKKIKDPEA 696
FLPPK IKDPEA
Sbjct: 885 FLPPKTIKDPEA 896
Score = 44.0 bits (99), Expect = 2e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 734 DPEXKKPEDWDKPEHIPXPNA 796
DPE KKPEDWDKP++IP P+A
Sbjct: 910 DPEDKKPEDWDKPQNIPDPDA 930
Score = 35.1 bits (77), Expect = 0.075
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 687 P*SXKPEDWDDKPTXQTPXTKSLR---IGTNLNTFXTQMPQT*XWDXXMDGKWXP 842
P + KPEDWDDK P K N+ + P+ WD +DG+W P
Sbjct: 894 PEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPDPDAKKPE--DWDDEIDGEWEP 946
Score = 31.5 bits (68), Expect = 0.93
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 734 DPEXKKPEDWDKPEHIPXP 790
DPE KKPEDWD + I P
Sbjct: 893 DPEAKKPEDWDDKKMIDDP 911
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 80.6 bits (190), Expect = 2e-15
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Frame = +1
Query: 400 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 549
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86
Query: 550 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLKADW--DFLPPKKIKDPE 693
D THL+TL+V+PDNT+EV ID E V G L D PP +I+DP+
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPD 136
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 677 KSRTLKPXTRRLG*QAHYXDPEXKKPEDWDKPEHIPXPNA 796
K L+ T + A DP+ K+PEDWD+ E IP P+A
Sbjct: 115 KGSLLEDMTPPVNPPAEIEDPDDKRPEDWDEREKIPDPDA 154
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 734 DPEXKKPEDWDK--PEHIPXPNA 796
DP+ +KP+DWD+ P IP NA
Sbjct: 151 DPDAEKPDDWDEDAPVKIPDTNA 173
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.1 bits (77), Expect = 0.075
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 377 PPQSMSCSCLTVNWTTKGLPSLLNG 303
P + SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 338 WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 219
+TT+GLPS ++ +NL E NL S KP S + ++
Sbjct: 959 YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 535 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLKADWD 660
D+ CKDD V D T E L+D+ +V+S L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 640 RQIQLSHCQ*GLHRCCRVSQSECTNVCRHHLCS 542
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,169,246
Number of Sequences: 59808
Number of extensions: 569042
Number of successful extensions: 1313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -