Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G07
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21000.1 68414.m02628 zinc-binding family protein similar to ...    29   2.9  
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr...    28   6.7  

>At1g21000.1 68414.m02628 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 246

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 658 CLECTTNTRXCHYRLYMYTDCSLC*LDRPVHKSVARIRTILRLSEVGCI 512
           CL+C  N   C Y L  + D  +  + R  + +V R+  I +  ++ C+
Sbjct: 46  CLDCAGNA-FCSYCLVKHKDHRVVQIRRSSYHNVVRVNEIQKFIDIACV 93


>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 402

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +1

Query: 502 YKKVCSPPQITSVSCEYEQQTYAPDDQVNKGCNLCTCKVDNDNXAYWSCTQD 657
           +K+      ++ + C   +   AP  +V +GC+   C+VD        C +D
Sbjct: 150 WKRTRYSSSVSVLDCRSHRWRQAPGMRVARGCSSTVCEVDGKIYIAGGCKED 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,824
Number of Sequences: 28952
Number of extensions: 305869
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)