Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_G05
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 196 3e-51
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 187 2e-48
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 175 7e-45
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 164 2e-41
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 135 9e-33
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 53 5e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 40 3e-04
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 26 7.9
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 196 bits (478), Expect = 3e-51
Identities = 96/140 (68%), Positives = 107/140 (76%)
Frame = +2
Query: 314 RLIGRXFXDATVQADMKHWPFEVVSDGGXPXIKVPYKGEDXTFFPEEVSSMVLTXMKETA 493
RLIGR F D VQ+DMKHWPF+V+S G P ++V YKGE TF PEE+SSMVL M+ETA
Sbjct: 70 RLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRETA 129
Query: 494 XAYLGQXVQNAVITVPXYFIDSXRXATKDAGTISGLNVLRIIXEPTAAXIAYXLDXKGTG 673
AYLG V +AV+TVP YF DS R ATKDAG I+GLNVLRII EPTAA IAY LD G
Sbjct: 130 EAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQG 189
Query: 674 XRNVLIFDLGGGTFXVSILT 733
NVLIFDLGGGTF VS+LT
Sbjct: 190 ESNVLIFDLGGGTFDVSLLT 209
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/58 (44%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 139 YSCVGVFXX-REGGXHRQRPXATGPLRLMLRAQTPRRLIGDAAKNXXAMXPNNTIXDA 309
YSCVG F R + T P + RLIGDAAKN AM P+NTI DA
Sbjct: 13 YSCVGHFSNNRVEIIANDQGNRTTPSYVAFT--DTERLIGDAAKNQVAMNPHNTIFDA 68
Score = 33.5 bits (73), Expect = 0.040
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 733 IEDGIXEVKSPPA-TPLGGEDFDNRXV 810
IE+GI EVK+ T LGGEDFD+R V
Sbjct: 210 IEEGIFEVKATAGDTHLGGEDFDSRLV 236
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 187 bits (456), Expect = 2e-48
Identities = 92/140 (65%), Positives = 105/140 (75%)
Frame = +2
Query: 314 RLIGRXFXDATVQADMKHWPFEVVSDGGXPXIKVPYKGEDXTFFPEEVSSMVLTXMKETA 493
RLIGR F D VQ+DMKHWPF+V+ G P I+V +KGE TF PEE+SSMVL M+E+A
Sbjct: 70 RLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLLKMRESA 129
Query: 494 XAYLGQXVQNAVITVPXYFIDSXRXATKDAGTISGLNVLRIIXEPTAAXIAYXLDXKGTG 673
A+LG V +AV+TVP YF DS R ATKDAG I+GLNVLRII EPTAA IAY LD
Sbjct: 130 EAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQH 189
Query: 674 XRNVLIFDLGGGTFXVSILT 733
NVLIFDLGGGTF VS+LT
Sbjct: 190 ETNVLIFDLGGGTFDVSLLT 209
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/58 (44%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 139 YSCVGVFXX-REGGXHRQRPXATGPLRLMLRAQTPRRLIGDAAKNXXAMXPNNTIXDA 309
YSCVG F R + T P + RLIGDAAKN AM P+NTI DA
Sbjct: 13 YSCVGHFSNNRVEIIANDQGNRTTPSYVAFT--DTERLIGDAAKNQVAMNPHNTIFDA 68
Score = 33.5 bits (73), Expect = 0.040
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 733 IEDGIXEVKSPPA-TPLGGEDFDNRXV 810
IE+GI EVK+ T LGGEDFD+R V
Sbjct: 210 IEEGIFEVKATAGDTHLGGEDFDSRLV 236
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 175 bits (426), Expect = 7e-45
Identities = 86/139 (61%), Positives = 101/139 (72%)
Frame = +2
Query: 314 RLIGRXFXDATVQADMKHWPFEVVSDGGXPXIKVPYKGEDXTFFPEEVSSMVLTXMKETA 493
RLIGR + D Q D+KHWPF+V+ + G P I+V Y GE F +E+S+MVLT MKE +
Sbjct: 74 RLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTKMKEIS 133
Query: 494 XAYLGQXVQNAVITVPXYFIDSXRXATKDAGTISGLNVLRIIXEPTAAXIAYXLDXKGTG 673
A L + V+ AVITVP YF DS R ATKDAG I+GLNVLRII EPTAA IAY LD K
Sbjct: 134 EAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDK 193
Query: 674 XRNVLIFDLGGGTFXVSIL 730
+NVLIFDLGGGTF VS+L
Sbjct: 194 PKNVLIFDLGGGTFDVSLL 212
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 244 RLIGDAAKNXXAMXPNNTIXDA 309
RL+GDAAKN AM P NT+ DA
Sbjct: 51 RLVGDAAKNQAAMNPRNTVFDA 72
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 186 PTTXGNRTTPSYVACTDTE 242
P G RTTPS+VA T+TE
Sbjct: 32 PNDQGARTTPSFVAFTETE 50
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 733 IEDGIXEVKSPPA-TPLGGEDFDNRXV 810
I+ G+ EV + T LGGEDFDN V
Sbjct: 214 IQGGVFEVLATAGDTHLGGEDFDNALV 240
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 164 bits (398), Expect = 2e-41
Identities = 86/189 (45%), Positives = 120/189 (63%)
Frame = +2
Query: 167 GKVXIIANDQXQQDHSVLCCVHRHRGVSSEMPPRTXWR*XPTTXYXMPIRLIGRXFXDAT 346
G+V IIANDQ + + E T + + RLIGR F + T
Sbjct: 55 GRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIK-RLIGRKFDEKT 113
Query: 347 VQADMKHWPFEVVSDGGXPXIKVPYKGEDXTFFPEEVSSMVLTXMKETAXAYLGQXVQNA 526
+ D+K +PF +V+D P ++V G+ F PEE+S+M+L+ MK+TA AYLG+ V +A
Sbjct: 114 MAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHA 173
Query: 527 VITVPXYFIDSXRXATKDAGTISGLNVLRIIXEPTAAXIAYXLDXKGTGXRNVLIFDLGG 706
V+TVP YF D+ R ATKDAGTI+GLNV+RI+ EPTAA IAY LD T ++++++DLGG
Sbjct: 174 VVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGG 232
Query: 707 GTFXVSILT 733
GTF VS+L+
Sbjct: 233 GTFDVSLLS 241
Score = 31.1 bits (67), Expect = 0.21
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 733 IEDGIXEVKSPPA-TPLGGEDFDNRXVXTLS 822
I++G+ EV + T LGGEDFDNR + L+
Sbjct: 242 IDNGVFEVLATSGDTHLGGEDFDNRVINYLA 272
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 135 bits (326), Expect = 9e-33
Identities = 71/149 (47%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Frame = +2
Query: 287 PTTXYXMPIRLIGRXFXDATVQADMKHWPFEVVS-DGGXPXIKVPYKGEDXTFFPEEVSS 463
P + RLIGR F + VQ D+K P+++V G ++ K T+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWLEARGK----TYSPSQIGG 165
Query: 464 MVLTXMKETAXAYLGQXVQNAVITVPXYFIDSXRXATKDAGTISGLNVLRIIXEPTAAXI 643
+L+ M+ETA YLG+ V+NAV+TVP YF DS R ATK AG I+GLNVLR++ EPTAA +
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAAL 225
Query: 644 AYXLDXKGTGXRNVLIFDLGGGTFXVSIL 730
AY LD K V +FDLGGGTF +SIL
Sbjct: 226 AYGLDKKNDAI--VAVFDLGGGTFDISIL 252
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 733 IEDGIXEVKSPPA-TPLGGEDFD 798
+ +G+ EV+S T LGGEDFD
Sbjct: 254 LNNGVFEVRSTNGDTHLGGEDFD 276
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 53.2 bits (122), Expect = 5e-08
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = +2
Query: 452 EVSSMVLTXMKETAXAYLGQXVQNAVITVPXYFIDSXRXATKDAGTISGLNVLRIIXEPT 631
E S L + E+A +LG V V++VP YF D+ R A + A +GL VL++I +P
Sbjct: 142 EASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPA 201
Query: 632 AAXIAYXLDXKGTGXRNVLIFDLGGGTFXVSILT 733
A +A + + V++ + G VS+++
Sbjct: 202 AVILALMYSEEVLIDKTVVVANFGATRSEVSVVS 235
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +2
Query: 428 EDXTFFPEEVSSMVLTXMKETAXAYLGQXVQNAVITVPXYFIDSXRXATKDAGTISGLNV 607
++ + EE+ +M + A + + + V+TVP +F + R +A I +V
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHV 190
Query: 608 LRIIXEPTAAXIAYXLDXK-GTGXRNVLIFDLGGGTFXVSILTSRMVSXR*NXRRRHHWE 784
L +I + A I Y L T +I+D G G+ ++++ V ++++
Sbjct: 191 LALIDDNVAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITR 250
Query: 785 VRTL 796
+R L
Sbjct: 251 IRAL 254
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 695 DLGGGTFXVSILTSRMVSXR*NXRRRHHWE 784
D+GG V I+T RM+ + + +HH E
Sbjct: 124 DIGGKDLLVPIITDRMLPESNDEKLKHHAE 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,401
Number of Sequences: 5004
Number of extensions: 44049
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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