Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G04
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    37   0.005
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.24 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.32 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   1.7  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   5.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   6.9  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 197 PWCWYCNREFDDEKILIQHQKAKHFKCHIC 286
           P C +CN  F D+  L +H + KH +C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 29/126 (23%), Positives = 38/126 (30%)
 Frame = +3

Query: 522  SPLAGVXAPSTXVXCPYXPTPMGARCPPRXCXXXPSXPXXSE*XAXPIPXQGXPKXRIDG 701
            +P      P   V  P  P P GA   P+     P  P  S   A P+P        +  
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS--GAPPVPKPSVAAPPVPA 1173

Query: 702  ARLXXGRRXXPXRRPXXRPVXSXAQXXKXXPFXPRVXXXXRDQXSPPPGSXRXTLXPVPX 881
                 G    P       PV   ++          V        +PP  +    L PVP 
Sbjct: 1174 PS--SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231

Query: 882  PVAREP 899
            P A+ P
Sbjct: 1232 PTAKAP 1237


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 567 PYXPTPMGARCPPRXCXXXPSXPXXSE*XAXPIPXQGXP 683
           P  PTP     PP      PS P  S   A PIP +  P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 269 NASLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 171
           N SL +V    F++QTP YN + KV +  SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 266 HFKCHICHKKLYTGPGLSI 322
           +F C++C   +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +2

Query: 200 WCWY--CNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHCMQVH 340
           +C Y  C + F  ++ L +H++     K F C  C++       L+ H  Q+H
Sbjct: 27  YCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,761
Number of Sequences: 5004
Number of extensions: 45720
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)