Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G04
         (967 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...   144   8e-35
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ...    37   0.023
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ...    36   0.053
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ...    31   0.87 
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ...    29   3.5  
At2g24030.2 68415.m02870 expressed protein  and genefinder             29   6.1  
At2g24030.1 68415.m02871 expressed protein  and genefinder             29   6.1  
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ...    28   8.1  

>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score =  144 bits (349), Expect = 8e-35
 Identities = 60/88 (68%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +2

Query: 167 MGRKKKKAS-KPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHK 343
           MG+KKK+A+ K WC+YC+REFDDEKIL+QHQKAKHFKCH+CHKKL T  G+ IH +QVHK
Sbjct: 1   MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHK 60

Query: 344 EAIDKVPNSLPNRSNIEIEIYGMEGIPP 427
           E + KVPN+   R + +IEIYGM+GIPP
Sbjct: 61  ENVTKVPNAKDGRDSTDIEIYGMQGIPP 88


>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type, domain
          Length = 745

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 197 PWCWYCNREFDDEKILIQHQKAKHFKCHICHK 292
           P C +C R F  +  L  H   +H+ CHIC +
Sbjct: 198 PMCEFCKRPFYGDNELYTHMSREHYTCHICQR 229


>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 812

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 188 ASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHK 292
           A  P C +C   F  +  L  H   +H+ CH+C +
Sbjct: 195 AGHPMCEFCRNPFYGDNELYTHMSTEHYTCHLCQR 229


>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 271

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 203 CWYCNREFDDEKILIQHQKAKHF 271
           C YC + F+DEK L +H   +H+
Sbjct: 107 CGYCKKSFNDEKFLDKHFSTRHY 129


>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
           (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
           type
          Length = 178

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 221 EFDDEKILIQHQKAKHF-KCHICHKKLYTGPGLSIHCMQVHKEAIDKVPN 367
           E  D K L    K  HF KC IC +   TG  L  H M+ H+ ++   P+
Sbjct: 77  EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGH-MRRHRSSMTVEPS 125


>At2g24030.2 68415.m02870 expressed protein  and genefinder
          Length = 374

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 170 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHI--CHKKLYTGPGLSIHCMQVHK 343
           G KKKK +  WC  CN + + E+ +  H   K     +     KL T P  S++     K
Sbjct: 296 GEKKKKETV-WCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITVPVRSLNADPGQK 354

Query: 344 EAI 352
           E++
Sbjct: 355 ESV 357


>At2g24030.1 68415.m02871 expressed protein  and genefinder
          Length = 455

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 170 GRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHI--CHKKLYTGPGLSIHCMQVHK 343
           G KKKK +  WC  CN + + E+ +  H   K     +     KL T P  S++     K
Sbjct: 377 GEKKKKETV-WCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQNKLITVPVRSLNADPGQK 435

Query: 344 EAI 352
           E++
Sbjct: 436 ESV 438


>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 272

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 203 CWYCNREFDDEKILIQHQKAKHFK-CHICHKKLYTGPGLSIHC 328
           C +C + F +EK L +H  ++H+   +  H K  +    ++HC
Sbjct: 109 CGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHC 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,993
Number of Sequences: 28952
Number of extensions: 266500
Number of successful extensions: 815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)