Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G03
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   2.8  
02_05_0040 + 25341418-25341810                                         29   5.0  
12_02_0954 - 24757417-24758214                                         29   6.6  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    28   8.7  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 337 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 158
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 157 QGG 149
             G
Sbjct: 311 HPG 313


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 392 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 294
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 448 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 317
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
            22582341-22582477,22582567-22582683,22583277-22583440,
            22583542-22583756,22583838-22584004,22584206-22584559,
            22584647-22584795,22584907-22585030,22585132-22585371,
            22585723-22586140,22586297-22586920,22586999-22587183,
            22587302-22587412,22587583-22587789,22587869-22587967,
            22588063-22588159,22588296-22588384,22588495-22588548,
            22588671-22588793,22588872-22588940,22589020-22589089,
            22589202-22589260,22589367-22589570,22590032-22590060,
            22590375-22590433,22590513-22590634,22591637-22591830,
            22591974-22592088
          Length = 1680

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 23   EHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVG 178
            +  V+SI L  +++   VGGH    SD  + +  ++  +     L+LLN VG
Sbjct: 1286 DQTVVSIALGALVHLIEVGGHQFSDSDWETLLKSIRDASYTTQPLELLNSVG 1337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,163,852
Number of Sequences: 37544
Number of extensions: 480161
Number of successful extensions: 1237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)