Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_G02
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)                     31   1.6  
SB_56597| Best HMM Match : COesterase (HMM E-Value=0)                  28   8.3  

>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
          Length = 786

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 410 PSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGE 550
           P ++  GTET    DN         T L+ +K   + HF D V+  E
Sbjct: 585 PCTNNAGTETSASIDNYVTYCSDSSTALSAEKLRNIIHFLDEVEKAE 631



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 410 PSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGE 550
           P S+   TET    DN         T L+ +K   + HF D V+  E
Sbjct: 731 PCSNNASTETSASIDNYVTYCSDSSTALSAEKLRNIIHFLDEVEKAE 777


>SB_56597| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 505

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 536 VKTGELIIGAVINRTASGMMLKVLCTAGPTSRYVADINV 652
           V T +++IG  +N+T +  M ++LC++   S     +NV
Sbjct: 13  VHTKDIVIGLNVNKTLNYAMYRILCSSDTISEDCLFLNV 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,460,341
Number of Sequences: 59808
Number of extensions: 475655
Number of successful extensions: 896
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)