Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F24
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    30   2.2  
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    29   5.1  
At3g25910.1 68416.m03230 expressed protein                             28   6.8  
At4g31530.1 68417.m04477 expressed protein                             28   8.9  
At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containi...    28   8.9  

>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 195 VQYFISRMNPYSPELNYFL---SYQYCRSL--GLQLASFETKEKADSITTYLTNAGYDKY 359
           V+YF+S++N Y  E +  L   S Q   S   G+    F   E A ++   ++   +DK+
Sbjct: 177 VRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVALSVSGEHFDKF 236

Query: 360 DFWTSGNNL 386
            F +S ++L
Sbjct: 237 SFSSSFSSL 245


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = -1

Query: 417 RCSSTKTCL----CRGYYPMSRSHICRNLHLLDKSLSNLPSPSSRT 292
           + S  KTCL    C G+Y   +S++C+   +L +S +NL + SS T
Sbjct: 356 KSSCAKTCLGNSSCVGFYHKEKSNLCK---ILLESPNNLKNSSSET 398


>At3g25910.1 68416.m03230 expressed protein
          Length = 372

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +2

Query: 461 HR-CSCPAC**QHGPSRRTTRKHCSTTHRPTRSVFQDGTRHD*WLHRAQSSDLPLGASTL 637
           HR CSC  C      S    RKH    H   R    D  R   W    + SDL    STL
Sbjct: 200 HRSCSCETC--DFSGSYSDLRKHARLLHPGVRPSEADPERQRSWRRLERQSDLGDLLSTL 257

Query: 638 RRDQG 652
           +   G
Sbjct: 258 QSSFG 262


>At4g31530.1 68417.m04477 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 689 VVVIATRLLAYEVLDLAAVLRLPVEGRSFERDAAISHDVFRPG 561
           V V  +  L + +++L  VL+    G  F RD+ +   + RPG
Sbjct: 194 VGVTKSNELPWSIMNLFGVLKYKKMGEDFLRDSGLPFTIIRPG 236


>At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 825

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 219 NPYSPELNYFL-SYQYCRSLGLQLASFETKEKADSITTYLTNAGYDKYDFWTSGNNL 386
           NP+    N  L SY   R L L    FE   + DS+T      GY+K   +T   +L
Sbjct: 181 NPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHL 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,822
Number of Sequences: 28952
Number of extensions: 378939
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)