Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F23
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    29   5.1  
At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) / ...    28   8.9  

>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +1

Query: 100 TSVCLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRV-RRSH 276
           T VC+     N   N     Q SP + NT+I  H S  + +R R  K +     V +   
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR--KRIGHLFHVIKLKS 167

Query: 277 GLRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRRSKS 402
           G   S C +  S V  +K+R    M+       R   R+SKS
Sbjct: 168 GSSTSSCHVAPSKVEGTKVRKQGWMV---RTLTRKKSRKSKS 206


>At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) /
           caspase family protein contains similarity to
           latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
           contains Pfam profile PF00656: ICE-like protease
           (caspase) p20 domain
          Length = 367

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +2

Query: 656 AAGIRNGLWCCRVTHLTPPXSPPGPATQLLLSYPQQAHAQH*HLSSLARRRTWXLC 823
           A  IR  L C  VTH+  P + P P      S P Q HA    L     R+   +C
Sbjct: 31  ARSIRCAL-CQAVTHIADPRTAPPPQPSSAPSPPPQIHAPPGQLPHPHGRKRAVIC 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,134
Number of Sequences: 28952
Number of extensions: 312947
Number of successful extensions: 822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)