Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F22
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   273   2e-74
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    64   3e-11
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    44   2e-05
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   4.4  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   5.9  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.8  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  273 bits (669), Expect = 2e-74
 Identities = 131/191 (68%), Positives = 156/191 (81%)
 Frame = +3

Query: 222 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 401
           E+ +ILEERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 402 EPDDVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSR 581
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVVDALGNPIDGKGPI T  R
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154

Query: 582 MRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTIIXX 761
            RV +KAPGI+PR SV EPM+TG+KA+DS+V  GRGQRELIIGDRQTG TA+A DTI+  
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNH 214

Query: 762 XXFXKGEDXKK 794
             +    D  K
Sbjct: 215 KRWNNSSDESK 225


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 34/111 (30%), Positives = 55/111 (49%)
 Frame = +3

Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 600 APGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTI 752
           AP    + +  E + TGIK VD L    RG +  + G    G T    + I
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELI 217


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = +3

Query: 474 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMRT 647
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E ++T
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 648 GIKAVDSLVXXGRGQR 695
           GI ++D L    RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 671 QRVNSLDTSPHRLTHRHPGNDT 606
           QR++SLD+S       HPGN T
Sbjct: 172 QRLSSLDSSQDSFQEEHPGNVT 193


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 151 DLGSSIRQA-PGYRASNTSGDQRHFSQTYNCGRRKASYSARDS 26
           DL +S+ Q    +++     DQ   ++ YN   R  ++SARDS
Sbjct: 371 DLIASVHQQYKAWKSQPKDRDQNQGNRAYNPPNRNQAFSARDS 413


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 360 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 259
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,236
Number of Sequences: 5004
Number of extensions: 69538
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)