Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F22
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    48   7e-06
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    43   3e-04
05_04_0392 - 20889699-20891726                                         32   0.50 
02_04_0275 - 21469391-21470650                                         31   0.88 
04_04_0946 - 29579779-29580004,29580098-29580210                       30   2.7  
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729...    30   2.7  
03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345           30   2.7  
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065...    29   3.5  
12_02_0305 - 17235832-17236379,17237345-17237444                       29   4.7  
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139...    28   8.2  

>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
 Frame = +3

Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
           +G  L ++ +   V VF G   +  +   V+ TG ++  PV   +LGR+ +  G PID  
Sbjct: 97  RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 156

Query: 558 GPIDTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQR 695
            PI  ++ + +   +     R    E ++TGI  +D +    RGQ+
Sbjct: 157 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 202


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
 Frame = +3

Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
           +G  L ++ +   V VF G   +  +   V+ TG ++  PV   +LGRV +  G PID  
Sbjct: 57  RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNG 116

Query: 558 GPIDTK-----SRMRVGIKAPG--IIP--RVSVREPMRTGIKAVDSLVXXGRGQR 695
            PI  +     S   +G    G  I P  R    E ++TGI  +D +    RGQ+
Sbjct: 117 PPILPEAYLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 171


>05_04_0392 - 20889699-20891726
          Length = 675

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 89  LISARIAGSVARRLPNAATQVKGGGARSGRG 181
           L ++ +AGSVA   P      KGGGA+SG G
Sbjct: 12  LFTSSLAGSVAAAAPPPPAGAKGGGAKSGGG 42


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 378 GLRRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQP 268
           G RRT  +   G SS+H H RY  Q SRH  +   QP
Sbjct: 345 GTRRTAMATDVGTSSNH-HVRYRFQDSRHCHAAPQQP 380


>04_04_0946 - 29579779-29580004,29580098-29580210
          Length = 112

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 330 HKHERYHHQCSRHDQSLLDQPWARLQGSSLR 238
           H H R+HHQ  +   ++   PW   +G +LR
Sbjct: 81  HHHHRHHHQQPQPRPAIDANPWGTARGPALR 111


>03_02_0308 -
           7297228-7298008,7298495-7298576,7298612-7298669,
           7298723-7298835,7298924-7299034,7299480-7299597,
           7299706-7299809,7300570-7300665,7301806-7302307
          Length = 654

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 423 PHPHRQVPS*GPFP*GLRRTPPSPQPGCSSSHKHERY--HHQCS 298
           PH  +Q P   P P      PP  +P  S+SH H R+  HH  S
Sbjct: 110 PHHQQQGPGASPSP---PPPPPRGRPSFSASHSHHRHGGHHHRS 150


>03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345
          Length = 122

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 95  SARIAGSVARRLPNAATQVKGGGARSGRGISQ 190
           SA  A +  RR P+      GGG  +GRG+ Q
Sbjct: 19  SAAAAAATGRRAPSRVVAALGGGGPAGRGMEQ 50


>04_04_1378 +
           33105564-33105634,33105786-33106253,33106558-33106583,
           33106741-33106771,33106890-33106977,33107094-33107338,
           33107339-33107383,33107530-33107621,33107718-33107920,
           33108215-33108496
          Length = 516

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 252 GSSLRGWWRSRQLCGWLRHVVCEMPRPLRAPPPLTWVAALGKRLATEPAIR 100
           G+ + G W  +Q  GW        P P   PPP T  AA     A   + R
Sbjct: 441 GAGMAGHWPPQQQQGWGNAGGMSWPHPPHPPPPPTNAAAAATATAAAASSR 491


>12_02_0305 - 17235832-17236379,17237345-17237444
          Length = 215

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 199 SQPPTKLPRSPPSSKRGSLEPRPRLI 276
           SQPPT  P  PP+   GS  PR  +I
Sbjct: 114 SQPPTIAPTQPPTPSGGSQCPRENVI 139


>09_06_0310 -
           22212348-22212695,22213561-22213766,22213796-22213905,
           22214351-22214427,22214466-22214486,22214518-22215651
          Length = 631

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 148 GQRWRCPQWPWHLANYMSQPPTK 216
           G R+ C  W W   NY+  PPT+
Sbjct: 594 GHRYMCWPWQWLGLNYVRLPPTE 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,709,279
Number of Sequences: 37544
Number of extensions: 584889
Number of successful extensions: 2241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2234
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)