Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F22
(848 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 215 4e-56
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 73 3e-13
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 31 0.89
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_42197| Best HMM Match : rve (HMM E-Value=0.017) 29 3.6
SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098) 29 4.8
SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 6.3
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053) 29 6.3
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 8.3
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 28 8.3
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 8.3
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 215 bits (525), Expect = 4e-56
Identities = 107/133 (80%), Positives = 115/133 (86%)
Frame = +3
Query: 387 MALNLEPDDVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 566
MALNLEPD+VGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPIDGKGP
Sbjct: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPT 60
Query: 567 DTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXD 746
+R RVG+KAPGIIPR SV+EPM TGIKAVDSLV GRGQRELIIGDRQTG TA+A D
Sbjct: 61 G-GTRARVGVKAPGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 119
Query: 747 TIIXXXXFXKGED 785
TII F G D
Sbjct: 120 TIINQKRFNDGVD 132
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 72.9 bits (171), Expect = 3e-13
Identities = 36/111 (32%), Positives = 60/111 (54%)
Frame = +3
Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
+ + G + LI+ G TG + +PVG + LGR+++ +G PID +GP++T R + +
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAE 182
Query: 600 APGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTI 752
AP + + +E + TGIK VD L +G + + G G T L + I
Sbjct: 183 APEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 233
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = +2
Query: 110 GSVARRLPNAATQVKGGGARSGRGISQTTCLNHPQSCRDLHHPRREDPWSRAQG 271
G AR PNA + GGG G G S +TC C+ H RE P A G
Sbjct: 528 GHFARECPNAESN--GGGFGGGGGSSDSTCF----KCQQTGHFARECPNESAAG 575
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = +2
Query: 110 GSVARRLPNAATQVKGGGARSGRGISQTTCLNHPQSCRDLHHPRREDPWSRAQG 271
G AR PNA + GGG G G S +TC C+ H RE P A G
Sbjct: 610 GHFARECPNAESS--GGGFGGGGGSSDSTCF----KCQQTGHFARECPNESAAG 657
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = +2
Query: 110 GSVARRLPNAATQVKGGGARSGRGISQTTCLNHPQSCRDLHHPRREDPWSRAQG 271
G AR PNA + GGG G G S +TC C+ H RE P A G
Sbjct: 33 GHFARECPNAESS--GGGFGGGGGSSDSTCF----KCQQTGHFARECPNESAAG 80
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 512 DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 402
D LSDG+ ++T N F+D+++ + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208
>SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 707 NDQLTLTTAXXY-QRVNSLDTSPHRLTHRHPGNDTWRLNTDPHTGF 573
N L L+ Y QR SP +L R P NDTW+ TD G+
Sbjct: 204 NQSLDLSPLNKYCQRETYATESPFQLARRIP-NDTWKTVTDAWNGY 248
>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
Length = 602
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -3
Query: 291 DQSLLDQPWARLQGSSLRGWWRSRQLCGWLRHVVCEMPRPLRAPPPLTWVAALGKRLATE 112
D + D ++L+ + +GW SR+ C + + L L G+R+
Sbjct: 373 DLTTSDPTLSQLRDTICKGWPESREKCPSMLYDYWNFREELTIEDGLV---LKGERIVIP 429
Query: 111 PAIRAEISDIFHK 73
P +R EI D HK
Sbjct: 430 PTLRPEILDTLHK 442
>SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -3
Query: 291 DQSLLDQPWARLQGSSLRGWWRSRQLCGWLRHVVCEMPRPLRAPPPLTWVAALGKRLATE 112
D + D ++L+ + +GW SR+ C + + L L G+R+
Sbjct: 718 DLTTSDPTLSQLRDTICKGWPESREKCPSMLYDYWNFREELTIEDGLV---LKGERIVIP 774
Query: 111 PAIRAEISDIFHK 73
P +R EI D HK
Sbjct: 775 PTLRPEILDTLHK 787
>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -3
Query: 324 HERY-HHQCSRHDQSLLD 274
HERY HHQ +RHD LD
Sbjct: 157 HERYQHHQTTRHDDQTLD 174
>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
Length = 1028
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 411 DVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 536
D G+++FG D + +IVKR + P G+Q +G ++AL
Sbjct: 205 DEGLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINAL 243
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 411 DVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 536
D G+++FG D + +IVKR + P G+Q +G ++AL
Sbjct: 486 DEGLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINAL 524
>SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 118 YRASNTSGDQRHFSQTYNCGRRKASYSARDSLR 20
+ N+S +Q HFS + KASY++ ++ R
Sbjct: 36 FNTCNSSSNQEHFSLGFTTSPEKASYTSNETKR 68
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 443 LVITKYYHTHIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 279
L +T Y T +V F K H+ +L L+ D L + + ITN T +F
Sbjct: 2403 LSVTNQYGTELVPFHEKDHTHPLGHQLSLLMKEDYLMSYVGGEQITNISYTGKIF 2457
>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
Length = 263
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 509 DPWACSRCFG*PY*WQGTNRHEIPYEGRY 595
D ACSR G W G++ +EIPY G +
Sbjct: 83 DTSACSRIAGNTGYWDGSDTNEIPYFGAW 111
>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 504 EQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPG 608
E ILGR+ + NP+ G+G T S ++ I A G
Sbjct: 211 ETILGRLPSFMENPLAGEGEFSTHSMLKDDIYAIG 245
>SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 363 PPSPQPGCSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSL-RGWWRSRQ 217
PP PQP +H+ H+ +HD L+++P+A + + +W R+
Sbjct: 66 PPKPQP----THQWRDLHNNHLQHDARLINRPYASEAKKGIDQAYWDRRK 111
>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 357 SPQPGCSSSHKHERYHHQCSRH 292
SP P SS H H R H+ C H
Sbjct: 61 SPLPLSSSHHHHHRRHYLCHHH 82
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Frame = -1
Query: 671 QRVNSLDTSPHRLTHRHPGNDTWRLNTDPHTGFR-VDWSLAINRVTQSI------YYT-- 519
QR SP +L R P NDTW+ TD G+ V L+ +T I YT
Sbjct: 25 QRETYATESPFQLARRIP-NDTWKTVTDAWNGYHSVPLRLSDRHLTTFITPFGRWRYTRA 83
Query: 518 PKDLLSDGNVYD 483
P+ LS G+ Y+
Sbjct: 84 PQGFLSSGDGYN 95
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Frame = -1
Query: 671 QRVNSLDTSPHRLTHRHPGNDTWRLNTDPHTGFR-VDWSLAINRVTQSI------YYT-- 519
QR SP +L R P NDTW+ TD G+ V L+ +T I YT
Sbjct: 606 QRETYATESPFQLARRIP-NDTWKTVTDAWNGYHSVPLRLSDRHLTTFITPFGRWRYTRA 664
Query: 518 PKDLLSDGNVYD 483
P+ LS G+ Y+
Sbjct: 665 PQGFLSSGDGYN 676
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 713 VTNDQLTLTTAXXYQRVNSLDTSPHRLTHRHPGNDTWRLNTDPHTGFRVDWSLAINRVTQ 534
V D ++ + Y+ + LD ++TH HP L TG ++ L +N ++
Sbjct: 1060 VAIDHISKASEQAYEYLLQLDDLERKITHVHPEERNSLLEAQQSTGLKLFNLLKLNIRSE 1119
Query: 533 SI 528
SI
Sbjct: 1120 SI 1121
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.3 bits (60), Expect = 8.3
Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Frame = -3
Query: 438 HYQILPHPHRQVPS*GPFP*GLRRTPPSPQPGCSSSHK----HERYHHQCSRHDQSLLDQ 271
H + P P R PS +P R PPSP S + H RY R+ S L
Sbjct: 345 HPRYPPSPPRYPPSPPRYPSSHPRYPPSPLRYLPSPIRYPPSHSRYPSSHPRYPPSHLRY 404
Query: 270 PWARLQGSSLRGWWRSRQLCGWLRHVVCEMPRPLRAPP-PLTWVAALGKRLATEPAIRAE 94
P SSL R L LR+ P PLR PP PL + +L AIR
Sbjct: 405 P-----PSSL------RYLPSHLRY----PPPPLRYPPSPLRYPPSLSPICHHLFAIRLH 449
Query: 93 ISDIFHKL 70
+ I H+L
Sbjct: 450 LPAIRHQL 457
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,861,243
Number of Sequences: 59808
Number of extensions: 602485
Number of successful extensions: 2064
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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