Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F22
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 238 3e-63
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 70 2e-12
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 70 2e-12
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 70 2e-12
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 48 6e-06
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 48 6e-06
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 48 6e-06
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 48 6e-06
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 48 6e-06
At5g22710.1 68418.m02653 expressed protein 31 1.3
At2g31740.1 68415.m03876 expressed protein 31 1.3
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 27 2.7
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 3.0
At1g16270.1 68414.m01948 protein kinase family protein contains ... 29 3.0
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 28 9.0
At2g41290.1 68415.m05099 strictosidine synthase family protein s... 28 9.0
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 9.0
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 9.0
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 238 bits (583), Expect = 3e-63
Identities = 114/181 (62%), Positives = 143/181 (79%)
Frame = +3
Query: 213 KAAEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMA 392
+AAE++ + E RI ++E GRV+S+GDGIA+VYGL IQA EMV F++G+KGMA
Sbjct: 276 RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 335
Query: 393 LNLEPDDVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDT 572
LNLE ++VG+VVFG D IKEGD+VKRTG+IVDVP G+ +LGRVVDA+G PIDGKG +
Sbjct: 336 LNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSD 395
Query: 573 KSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTI 752
+ RV +KAPGI+ R SV EPM+TG+KAVDSLV GRGQREL+IGDRQTG T +A DTI
Sbjct: 396 HEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTI 455
Query: 753 I 755
+
Sbjct: 456 L 456
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/111 (35%), Positives = 60/111 (54%)
Frame = +3
Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 600 APGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTI 752
AP ++ + +E + TGIK VD L RG + + G G T L + I
Sbjct: 195 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 245
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/111 (35%), Positives = 60/111 (54%)
Frame = +3
Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 197
Query: 600 APGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTI 752
AP ++ + +E + TGIK VD L RG + + G G T L + I
Sbjct: 198 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 248
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/111 (35%), Positives = 60/111 (54%)
Frame = +3
Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 600 APGIIPRVSVREPMRTGIKAVDSLVXXGRGQRELIIGDRQTGXTALAXDTI 752
AP ++ + +E + TGIK VD L RG + + G G T L + I
Sbjct: 195 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 245
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 115
Query: 558 GPIDTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQR 695
PI ++ + + + R E ++TGI +D + RGQ+
Sbjct: 116 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 161
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 115
Query: 558 GPIDTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQR 695
PI ++ + + + R E ++TGI +D + RGQ+
Sbjct: 116 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 161
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 558 GPIDTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQR 695
PI ++ + + + R E ++TGI +D + RGQ+
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 558 GPIDTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQR 695
PI ++ + + + R E ++TGI +D + RGQ+
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +3
Query: 381 KGMALNLEPDDVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 557
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 558 GPIDTKSRMRVGIKAPGIIPRVSVREPMRTGIKAVDSLVXXGRGQR 695
PI ++ + + + R E ++TGI +D + RGQ+
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 160
>At5g22710.1 68418.m02653 expressed protein
Length = 262
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 635 LTHRHPGNDTWRL-NTDPHTGFRVDWSLAINRVTQSIYYTPKDLLSDGNVYDSTSTLDNI 459
+ HR P TW + N DWS + YTP D+ D +++D+ S N+
Sbjct: 22 INHRDPSYMTWWIHNAVMRLDLVCDWSYLVAMKMDPSVYTPVDIDVDFDIFDNHSA-GNV 80
Query: 458 S 456
S
Sbjct: 81 S 81
>At2g31740.1 68415.m03876 expressed protein
Length = 760
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 228 STILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEP 407
S +EE L + +A L + G L I + + R +K++ M + L G+ L E
Sbjct: 651 SDFIEETFLLSVKQA-LPQHG--LFIVNLVTRSQSVKDMVVSRMKKVFDHLFGLQLE-EE 706
Query: 408 DDVGVVVFG--NDKLIKEGDI 464
DDV VV+FG ++ +I E DI
Sbjct: 707 DDVNVVLFGLCSESVISENDI 727
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 27.1 bits (57), Expect(2) = 2.7
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -3
Query: 360 PSPQPGCSSSHKHERYHHQCSRHDQSLLDQP 268
P P H H +HHQ + Q + QP
Sbjct: 149 PHPHHQQQQQHNHHHHHHQQQQQHQQMYFQP 179
Score = 21.0 bits (42), Expect(2) = 2.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 438 HYQILPHPHRQ 406
++Q+ PHPH Q
Sbjct: 144 NHQLHPHPHHQ 154
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 423 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 527
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 452 LDKLVITKYYHTHIVRFQVKGHSLEA 375
L + V+ YY TH+V++Q+ G L+A
Sbjct: 205 LRQKVLEIYYRTHVVKYQLPGEDLDA 230
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -3
Query: 360 PSPQPGCSSSHKHERYHHQCSRH 292
PSP P S H H +HH H
Sbjct: 321 PSPSPSPHSKHHHHHHHHHHHHH 343
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 184 LANYMSQPPTKLPRSPPSSKRGSLEPRPRLI*KR 285
L +YM P T+L RGSLE +P+ I K+
Sbjct: 1168 LDSYMEGPSTRLRVRHQKPSRGSLETKPKKIGKK 1201
>At2g41290.1 68415.m05099 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 376
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 357 SPQPGCSSSHKHERYHHQCSR 295
S + GC H+H+R H C R
Sbjct: 91 SAREGCEGPHEHQRTEHVCGR 111
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 515 KDLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVR 405
KDL S + L+ I F D+L++ + H H+++
Sbjct: 363 KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -3
Query: 423 PHPHRQVPS*GPFP*GLRRTPPSPQPGCSS---SHKHERYHH 307
P P P P P L PP+P P + HKH+R+HH
Sbjct: 148 PAPVSPPPVQAPSPISL---PPAPAPAPTKHKRKHKHKRHHH 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,053
Number of Sequences: 28952
Number of extensions: 413164
Number of successful extensions: 1398
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -