Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F19
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    33   0.069
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   7.9  

>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = -3

Query: 465 YLAPPASIFYC-LANVRISDQTFFQEQISLCREKVASFLE-IFTTNSSRHYGWHSESRKF 292
           Y+  P S+    L    I  +T  +  +S+ R K+  F+  + TTNS   YG  S SRK 
Sbjct: 61  YIFQPDSVLLTGLMTPTIRIRTQVKPILSVFRNKIFDFIPTVVTTNSKNGYGSESASRKD 120

Query: 291 ALKFG*RDHLSR-SE*KLLKKFHIKSSLPKT 202
            +    +  +S  SE +++ KF  K  + KT
Sbjct: 121 VIVENVQISISTGSECRIIFKFLCKHGVIKT 151


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 268 SLKSVRIKITKKVSHKKFSSENNVRLLSVNHSQFSRG--PRTVDDTIALTK 122
           +++S   K+ K+  H + ++ +NV   S+N    SRG  P T  D+++++K
Sbjct: 128 TIRSPPYKVKKESCHTEINNVSNVSTESINVIDASRGYSPYTSVDSLSVSK 178


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 498 FCMHKYCVAFVYLAPPASIFYC 433
           F M+KY V    L  P +IF+C
Sbjct: 138 FTMYKYTVILTALEMPLAIFFC 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,775
Number of Sequences: 5004
Number of extensions: 55410
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)