Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F19
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)                     29   3.7  
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      29   3.7  
SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)                   29   3.7  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   29   3.7  
SB_15486| Best HMM Match : rve (HMM E-Value=1.2e-09)                   29   3.7  
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)                  29   4.9  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1602

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 336 EPELQHVSLDEQRDLFRIERVIRTRGKGR 364


>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
          Length = 1557

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 344 EPELQHVSLDEQRDLFRIERVIRTRGKGR 372


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 132 EPELQHVSLDEQRDLFRIERVIRTRGKGR 160


>SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)
          Length = 657

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 369 EPELQHVSLDEQRDLFRIERVIRTRGKGR 397


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 211 EPELQHVSLDEQRDLFRIERVIRTRGKGR 239


>SB_15486| Best HMM Match : rve (HMM E-Value=1.2e-09)
          Length = 662

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 369 EPELQHVSLDEQRDLFRIERVIRTRGKGR 397


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 500 QPQSAHVSVEKDKDGYSVQLAKRTRGCGR 586
           +P+  HVS+++ +D + ++   RTRG GR
Sbjct: 370 EPELQHVSLDEQRDLFRIERVIRTRGKGR 398


>SB_58127| Best HMM Match : DUF1605 (HMM E-Value=0.17)
          Length = 231

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +3

Query: 30  TCNSRHLAVVTGRGAKCQFVYIALEQRCISALVSAIVSSTVRGPRLNCE 176
           +C+S H+AV T     C FV I   Q+ +        +ST++GPRLN E
Sbjct: 43  SCSSFHIAVTT-----CVFVCITTRQQLLRE------TSTMQGPRLNSE 80


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 268  SLKSVRIKITKKVSHKKFSSENNVRLLSVNHSQFSRGPRTVD 143
            ++K +    T+K S+KK+    N+ L    HS F   P  VD
Sbjct: 906  TIKDMSSSSTQKGSNKKYYEHRNITLGCTGHSAFDAPPYWVD 947


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,737,932
Number of Sequences: 59808
Number of extensions: 447949
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)