Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F19
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56160.1 68416.m06242 expressed protein                             29   3.0  
At3g29796.1 68416.m03790 hypothetical protein                          29   5.3  
At3g17090.1 68416.m02180 protein phosphatase 2C family protein /...    28   7.0  

>At3g56160.1 68416.m06242 expressed protein 
          Length = 436

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 114 ISALVSAIVSSTVRGPRLNCE*FTDNNRTLFSEENFLC 227
           ++ L+  I+   +R        F DNNR LFS+ N +C
Sbjct: 268 VTLLIPLIIGKVIRESFKGFANFVDNNRKLFSKINAIC 305


>At3g29796.1 68416.m03790 hypothetical protein
          Length = 463

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 634 RTSYSSASSRFRREKFSSAASRSLGKLNAIAIFVFFYGN 518
           R  YSSA  RF  E +SSA  R +G+ N+ A   F   N
Sbjct: 102 REIYSSAKKRFVEEIYSSANLRFVGENNSSANLSFIGQN 140


>At3g17090.1 68416.m02180 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 384

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 247 KITKKVSHKKFSSENNVRLLSVNHSQFSRG--PRTVDDTIALTKALIH 110
           KI KKV  + F  +  V ++ +NH   SRG    T D T+++  AL H
Sbjct: 338 KIDKKV-RRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIRSALEH 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,602
Number of Sequences: 28952
Number of extensions: 289620
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)