Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F18
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 36 0.006
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 33 0.039
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.28
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 27 2.6
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 4.5
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 4.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.8
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 36.3 bits (80), Expect = 0.006
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Frame = +1
Query: 394 QALEELAVNYDQKSQEVDSKSR-ECDQLSEDLQSKQSALTSATAELQQLRDLS----AHQ 558
+A+++ N++ K +V +KSR E ++L E+ +SK + TS + +L DLS AH
Sbjct: 140 KAIDDFYENFNDKRDKVIAKSRKEQEKLLEENESKSTGTTS-WERILKLIDLSDKPEAHG 198
Query: 559 R--KRIAELLTNLLRDLAEIGAA 621
R +R ELL +L +D GAA
Sbjct: 199 RSTERFRELLISLAKDSNAPGAA 221
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.5 bits (73), Expect = 0.039
Identities = 25/133 (18%), Positives = 56/133 (42%)
Frame = +1
Query: 148 AVASVVEDAAMQAKLEALYQQLDDKDEEINQHSQLVXXXXXXXXXXXXXIACTRRDYEAL 327
+V + E+ + L+ +++L++ +E+ + Q + + R ++E
Sbjct: 593 SVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANFEQK 652
Query: 328 QGDMNRIXXXXXXXXXXXXXXLQALEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSAL 507
+ ++ L LEE + +K ++VDS + L EDL+ + AL
Sbjct: 653 ESTLS-------DENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEAL 705
Query: 508 TSATAELQQLRDL 546
+ E + LR++
Sbjct: 706 RFSKLEAKNLREV 718
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -1
Query: 698 TSHCNSSSSFPTVXTLSLKSSSDPPTAAPISARSRSKFVNNSAI 567
+S +SSSS + + S SSS +A+P S++S SKF ++S I
Sbjct: 184 SSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFI 227
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +1
Query: 424 DQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDL 603
++ +QEV+ + QL+ DL+ + + + AE Q +S R R+ ELL++ ++
Sbjct: 485 EKNAQEVEYYASLVKQLTSDLEERDTYIAMLEAERSQGTAIS-RARLRMEELLSDHNFEI 543
Query: 604 AEI 612
A++
Sbjct: 544 ADL 546
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 90 VTPVTSFIEEKPPAPPXTSGCRQCCRRRR 176
+ P TS +EE P P T CRR R
Sbjct: 232 IRPYTSLVEEDDPVPVVTDTIISRCRRCR 260
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 737 NIFDFTFHFXDVETSHCNSSSSFPTVXTLSLKSSSD 630
N+F + FH + + + SF +V ++SLK S D
Sbjct: 9 NVFTWAFHVSEYDGAPLLLLGSFSSVASVSLKRSGD 44
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 698 TSHCNSSSSFPTVXTLSLKSSSDPPTAAPISARSRSKFVNNSAIRFR*CADKSRSCCSSA 519
+S SSSSF + + S SSS T + S+ S S ++S+ R + S S S+
Sbjct: 346 SSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSS 405
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = -1
Query: 698 TSHCNSSSSF-PTVXTLSLKSS---SDPPTAAPISARSRSKFVNNSAIRFR*CADKSRSC 531
+S +SSSSF T+ + S+ SS S PT++ + S S ++S+ + KS S
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSS 367
Query: 530 CSSAVA 513
SS V+
Sbjct: 368 FSSTVS 373
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Frame = +1
Query: 400 LEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALT---SAT-------AELQQLRDLS 549
L+E ++ + + EC+QL +LQ+ Q +L S T AEL+
Sbjct: 806 LDEFTPILEKSENDYNGVKLECEQLEGELQNHQQSLVQGESTTSLIKTEIAELELSLVNE 865
Query: 550 AHQRKRIAELL 582
H RK++ EL+
Sbjct: 866 EHNRKKLTELI 876
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +1
Query: 436 QEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDLAEIG 615
+EV+ + E QLSE K LQ L + + ++ +NLL L
Sbjct: 599 EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTE 658
Query: 616 AAVGGSELDFKLNVXTVGKLEEEL 687
A V + + N + E EL
Sbjct: 659 AEVDSLRKENEENKQVIALKESEL 682
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 698 TSHCNSSSSFPTVXTLSLKSSSDPPTAAPISARSRSKFVNNSAI 567
TS + SSSF + T S + S PP + + F+ +S++
Sbjct: 669 TSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSL 712
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = +1
Query: 415 VNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLL 594
V+ D +Q + S E + L T+ELQ + L QRK + + L
Sbjct: 139 VDEDIDTQTMSSDMSEVQSMEISLNCDHEFFEKLTSELQSVEGLQREQRKILFNAIDILS 198
Query: 595 RDLAEIGA 618
+++ I +
Sbjct: 199 HEISLIAS 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,786
Number of Sequences: 5004
Number of extensions: 40713
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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