Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F18
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04990.1 68416.m00542 hypothetical protein                          33   0.32 
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    32   0.42 
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ...    32   0.42 
At2g30530.1 68415.m03718 expressed protein                             31   1.3  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    31   1.3  
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    30   2.3  
At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)...    29   5.2  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    28   6.9  
At1g55080.1 68414.m06291 expressed protein                             28   6.9  
At2g40520.1 68415.m05000 nucleotidyltransferase family protein c...    28   9.1  
At2g37080.1 68415.m04550 myosin heavy chain-related low similari...    28   9.1  
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ...    28   9.1  
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016...    28   9.1  

>At3g04990.1 68416.m00542 hypothetical protein
          Length = 227

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 418 NYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDL 546
           N ++ S+E+D K +E   LS DL+ K  A  +  +E+  L+ L
Sbjct: 31  NIEKSSRELDLKEKELQILSSDLEQKSHAFEAEKSEVGDLKKL 73


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 394  QALEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLR 540
            +A  E      + + E+++ +R+ DQL E +Q  +  L+++ +E+Q LR
Sbjct: 1015 KAFSEAEARNSELATELENATRKADQLHESVQRLEEKLSNSESEIQVLR 1063


>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
           myosin heavy chain PCR43 [Arabidopsis thaliana]
          Length = 556

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 394 QALEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLR 540
           +A  E      + + E+++ +R+ DQL E +Q  +  L+++ +E+Q LR
Sbjct: 216 KAFSETEARNSELATELENATRKADQLHESVQRLEEKLSNSESEIQVLR 264


>At2g30530.1 68415.m03718 expressed protein
          Length = 371

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 752 MASVDNIFDFTFHFXDVETSHCNSSSSFPTVXTLSLKSSSDPPTAAPISARS 597
           M  VD I DF F   ++ET         PT       SSS  P++A  SA S
Sbjct: 1   MNKVDEIEDFRFEDLEMETEKDKERMMTPTTRMSYSSSSSPSPSSASSSAAS 52


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/85 (18%), Positives = 41/85 (48%)
 Frame = +1

Query: 424 DQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDL 603
           + + QE+  K +E D++  +L+ +   LTS   EL +  +++      + + L ++ ++ 
Sbjct: 152 ESEHQEILKKLKESDEICGNLRVETEKLTSENKELNEKLEVAGETESDLNQKLEDVKKER 211

Query: 604 AEIGAAVGGSELDFKLNVXTVGKLE 678
             + A +     D +  +  V +L+
Sbjct: 212 DGLEAELASKAKDHESTLEEVNRLQ 236


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = +1

Query: 400 LEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAEL 579
           +E +  N D+KS E+D++ R  + ++ +L  +   L      L++ +D    Q    AE 
Sbjct: 698 MERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQ----AEQ 753

Query: 580 LTNLLRDLAEIGAAVGGSELDFKLNVXTVGKLEEE 684
             NL  DL +   +V   E +  L    + K+E E
Sbjct: 754 AENLRVDLEKTKKSV--MEAEASLQRENMKKIELE 786


>At3g50450.1 68416.m05518 hypersensitive response protein 1 (HR1)
           identical to HR1 [Arabidopsis thaliana] GI:12958166;
           contains Pfam profile PF05659: Arabidopsis
           broad-spectrum mildew resistance protein RPW8
          Length = 189

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 26/97 (26%), Positives = 43/97 (44%)
 Frame = +1

Query: 391 LQALEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRI 570
           L  +    +  D  ++EVD   R+  +  + L  K   L  A AEL+    L  ++ KR 
Sbjct: 44  LHKITPFVIKIDTLTEEVDEPFRKVIEELKRLLEKAIRLVDAYAELKLRNLLRKYRYKRR 103

Query: 571 AELLTNLLRDLAEIGAAVGGSELDFKLNVXTVGKLEE 681
            + L + LR + ++   V    LD K     +GK+ E
Sbjct: 104 IKELDSSLRWMIDVDVQV-NQWLDIK---KLMGKMSE 136


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 400 LEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAEL 579
           LE L  +   K+ E++ K +E   + E +++KQS       +    +     +RKR  E 
Sbjct: 60  LEALEESIKVKALELEKKEKELCLIDESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQ 119

Query: 580 L 582
           L
Sbjct: 120 L 120


>At1g55080.1 68414.m06291 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 400 LEELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAEL 579
           + EL  ++D+  Q ++S S      +  +  ++  +  +   LQQ RDL    RK I E+
Sbjct: 180 VNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEI 239

Query: 580 LT 585
           +T
Sbjct: 240 VT 241


>At2g40520.1 68415.m05000 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 502

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 65  SKSAGD*SCYSSNIIY*RKTSSTSXYQWLSPVLSKTPQCRLS 190
           S+  GD   Y +N+IY +     S + WL P L  T    +S
Sbjct: 385 SQLKGDFDRYRNNLIYGKWFHGESLHNWLPPSLDTTSWANIS 426


>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
           to myosin heavy chain [Rana catesbeiana] GI:4249701
          Length = 583

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +1

Query: 406 ELAVNYDQKSQEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAEL 579
           ELA    Q  +E+  K++E  QLS     K+ A   A    QQL +++A +  RI EL
Sbjct: 78  ELASQISQLQEEL-KKAKE--QLSASEALKKEAQDQAEETKQQLMEINASEDSRIDEL 132


>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
           similar to leucine zipper-EF-hand containing
           transmembrane protein 1 [Homo sapiens] GI:4235226;
           contains Pfam profile PF00036: EF hand
          Length = 736

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 418 NYDQKSQEVDSKSRE-----CDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRI 570
           ++D+K ++V S+++E     CD+  E L   ++   +   E  Q  D+S  QR R+
Sbjct: 101 DHDKKGEKVTSQTKEASPEECDEAVEGLSLAKAKAKAMKLEESQKSDISIMQRVRL 156


>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; similar to  Myosin heavy
            chain, non-muscle (Zipper protein) (Myosin II)
            (SP:Q99323) {Drosophila melanogaster} similar to EST
            gb|T76116
          Length = 1730

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = +1

Query: 436  QEVDSKSRECDQLSEDLQSKQSALTSATAELQQLRDLSAHQRKRIAELLTNLLRDLAEIG 615
            QEV     E  +  E ++S+  ALTS  AE Q    L         + ++ L  +   + 
Sbjct: 846  QEVQLARVEEQEEIEKVKSEVDALTSKLAETQTALKLVEDALSTAEDNISRLTEENRNVQ 905

Query: 616  AAVGGSELDFKLNVXTVGKLEEEL 687
            AA   +EL+ +  V     +  EL
Sbjct: 906  AAKENAELELQKAVADASSVASEL 929


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,158
Number of Sequences: 28952
Number of extensions: 224004
Number of successful extensions: 785
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)