Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_F17
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 394 e-111
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 218 7e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 218 9e-58
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 157 1e-39
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 6e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 5e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 69 1e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 1e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.64
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.9
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 7.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 394 bits (970), Expect = e-111
Identities = 190/243 (78%), Positives = 203/243 (83%)
Frame = +2
Query: 125 DEEVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPVIRXVMVGMGQKDSYVGDEAQS 304
+EE+AALV+DNGSG + P P +MVGMGQKDSYVGDEAQS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR-PRHHGIMVGMGQKDSYVGDEAQS 60
Query: 305 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 484
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 485 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDI 664
QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLD+
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Query: 665 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEMATXASXXSLXKFX 844
AGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDF QE+ T A SL K
Sbjct: 181 AGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSY 240
Query: 845 XLP 853
LP
Sbjct: 241 ELP 243
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 218 bits (533), Expect = 7e-58
Identities = 105/222 (47%), Positives = 151/222 (68%), Gaps = 2/222 (0%)
Frame = +2
Query: 131 EVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPVIRXV-MVGMGQ-KDSYVGDEAQS 304
E A +V+DNG+G+V+ P P++R G Q KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR-PILRAEEKTGNVQIKDVMVGDEAEA 60
Query: 305 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 484
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM
Sbjct: 61 VRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 485 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDI 664
+ MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV 180
Query: 665 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 790
AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D
Sbjct: 181 AGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYD 222
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 218 bits (532), Expect = 9e-58
Identities = 105/222 (47%), Positives = 148/222 (66%), Gaps = 1/222 (0%)
Frame = +2
Query: 143 LVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPVIRXVMVGMGQKDSYVGDEAQSKRGILT 322
+ +DNGSG+++ P R VM QKD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHER-VMPSSIQKDMFVGSEAQNLRGLLK 70
Query: 323 LKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 499
++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 500 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDIAGRDL 679
T N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + +I GRD+
Sbjct: 131 TLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDV 190
Query: 680 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEM 805
TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+
Sbjct: 191 TDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 157 bits (382), Expect = 1e-39
Identities = 82/189 (43%), Positives = 115/189 (60%), Gaps = 11/189 (5%)
Frame = +2
Query: 275 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 451
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 452 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 607
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 608 TVPIYEGYALPHAILRLDIAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYV 781
+P+ EGY + +I + +AGRD+T ++ +L +R S TAER IKE+ CYV
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYV 247
Query: 782 ALDFXQEMA 808
D +E +
Sbjct: 248 CPDIVKEFS 256
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 174 KAGFAGDDAPRAVFP---SXRGKAPSSG 248
K G+AG+DAP VFP + R SSG
Sbjct: 18 KLGYAGNDAPSYVFPTVIATRSAGASSG 45
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 95.1 bits (226), Expect = 1e-20
Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 3/225 (1%)
Frame = +2
Query: 143 LVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPVIRXVMVGMGQKDSYVGDEAQSKRGILT 322
LV+DNGS ++ P ++ V R + + + VG++ + G +
Sbjct: 27 LVIDNGSWQLRAGWGGEKD-----PKLVFDNLVSRYRDRKLSRTSTLVGNDTLIEVGSRS 81
Query: 323 L-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 499
+ + P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 82 IARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFE 140
Query: 500 TFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDIAGR 673
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGS 200
Query: 674 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEMA 808
+ YL+K+ + SF + C+V+ D+ ++A
Sbjct: 201 QSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIA 245
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 89.4 bits (212), Expect = 6e-19
Identities = 58/197 (29%), Positives = 94/197 (47%)
Frame = +2
Query: 128 EEVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPVIRXVMVGMGQKDSYVGDEAQSK 307
+EV+A+V+D GS + + +P E R + G++ Y +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLF---GEEYIY-----KSN 60
Query: 308 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 487
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 61 PG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLE 119
Query: 488 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDIA 667
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +
Sbjct: 120 TMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFS 179
Query: 668 GRDLTDYLMKILTERGY 718
G + D L + L ++ +
Sbjct: 180 GNAINDILAQTLRDKNF 196
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 174 KAGFAGDDAPRAVFPSXRGK 233
+ GF+G+D P+ V PS G+
Sbjct: 24 RIGFSGEDIPKCVLPSYCGE 43
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.0 bits (196), Expect = 5e-17
Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 2/201 (0%)
Frame = +2
Query: 128 EEVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPVIRXVMVGMGQKDSYVGDEAQSK 307
EE+ +LV+D GS + + +P S+ G +R + G ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILP--SYYG--VRSDVTG---RNKYVVDELQIH 60
Query: 308 RGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 481
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 61 APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120
Query: 482 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 661
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I +
Sbjct: 121 MEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQS 180
Query: 662 IAGRDLTDYLMKILTERGYSF 724
+AG L + ++ F
Sbjct: 181 LAGDFLNANIEQLFNTMNIEF 201
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 68.5 bits (160), Expect = 1e-12
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Frame = +2
Query: 281 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 448
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 449 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 586
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 587 SGDGVSHTVPIYEGYALPHAILRLDIAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 766
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKE 220
Query: 767 KLCYVALDFXQEM 805
+CYV+ +F ++M
Sbjct: 221 SVCYVSQNFKEDM 233
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 68.1 bits (159), Expect = 1e-12
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +2
Query: 332 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 499
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 500 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDIAGRDL 679
P +A + ++ LYA G G+V+D G + PI +G + A +L + GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 680 TDYLMKILTERGYSFTTTAEREIVRDIKE 766
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +2
Query: 323 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 466
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 467 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 646
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 647 ILRLDIAGRDLTDYLMKILTERGYSF 724
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 392 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 535
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 516 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 650
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 513 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 650
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 513 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 650
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 513 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 650
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.64
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 492 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 650
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 492 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 650
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 504 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 650
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 537 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 641
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 537 PCSRCTRPVVPPVSCWTPATVSPTPCPST 623
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 513 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 620
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 434 LLTEAPLNPKANREKMTQIMFETFN 508
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 571 RYRAGLRRRCLPHRAHLRGIRTPPRHPASGHSRSRPHRLPHEDPHRARLLVHYHRRAGNR 750
RYR L R P LR + +PP PA+ SR P RL++ H++ R
Sbjct: 84 RYRGSLLNRNSPS---LRSL-SPPATPATPRSRIEGESQTSAIPQTDRLILENHQQEFER 139
Query: 751 S 753
+
Sbjct: 140 A 140
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 519 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 662
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,582
Number of Sequences: 5004
Number of extensions: 74195
Number of successful extensions: 283
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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