Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F16
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.53 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.53 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.93 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   5.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 349 TQEKV-YNEAAKSIVSDVLAGYNGTIFAYGQTSS 447
           TQ KV Y E  K ++ ++L GY+  I   G+ ++
Sbjct: 22  TQGKVNYREKEKEVLDNILGGYDARIRPSGENAT 55


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 349 TQEKV-YNEAAKSIVSDVLAGYNGTIFAYGQTSS 447
           TQ KV Y E  K ++ ++L GY+  I   G+ ++
Sbjct: 22  TQGKVNYREKEKEVLDNILGGYDARIRPSGENAT 55


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 374 LPKALYQMFWQATMELYLPMVKQVLGKHIPWKVS 475
           LPK +    W + MEL+  M       H+ WK S
Sbjct: 76  LPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPS 109


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 381 KHCIRCSGRLQWNYICLWSNKFWENT 458
           ++  RC GR+QW+ + ++  ++   T
Sbjct: 121 RNATRCIGRIQWSKLQVFDCRYVTTT 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,531
Number of Sequences: 438
Number of extensions: 4297
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)