Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_F15
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   0.88 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect(2) = 0.88
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 435 HGPHSLRGRDSWTPEGS 385
           HG H L G  S  P GS
Sbjct: 138 HGLHGLHGLSSSAPTGS 154



 Score = 21.4 bits (43), Expect(2) = 0.88
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 507 KERNSRDI*SCRRGAGILFPTTACHGPHSLRG 412
           KE+ SR+    RR    L   T  HG H L G
Sbjct: 111 KEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 189 FLLRYRCLTHLCLCLPSDILYVYEIW-LNRI 100
           +LL  +CLT +CL   S I+    +W +N+I
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVSTILLWFINKI 411


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 817 LTPRXFSPQPAGSLSGSDXXXSQSKPWSGTS 725
           +TP      P+GS   SD   + S+  SG S
Sbjct: 371 ITPELLGLMPSGSSVHSDSGENNSRGHSGQS 401


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 487 IPRISFFYAETTSVP----ASIGFMGFTMSAKGGITLNYGRRSQTASTVF 624
           I R + +Y     VP    AS+  +GFT+    G  L+ G     + TVF
Sbjct: 227 IRRRTLYYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVF 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,936
Number of Sequences: 438
Number of extensions: 5330
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)